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Man Pages


Manual Reference Pages  -  ASN2FF (1)

NAME

asn2ff - convert ASN.1 biological data to a flat format (old version)

CONTENTS

Synopsis
Description
Options
Author
See Also

SYNOPSIS

asn2ff [-] [-A X] [-B X] [-C] [-G] [-L F] [-M] [-R] [-V F] [-a filename] [-b] [-d] [-e] [-f b/p/e/s/x/z] [-g] [-h F] [-k F] [-l filename] [-m r/d/s/c/k/l/e/p] [-n F] [-o filename] [-p F] [-q] [-r filename] [-s] [-t] [-v F] [-w] [-y] [-z]

DESCRIPTION

asn2ff converts descriptions of biological sequences from NCBI’s ASN.1 format to one of several flat-file formats. This program is built around a deprecated interface; please use asn2gb\FP(1) instead.

OPTIONS

A summary of options is included below.
- Print usage message
-A X Show region starting at X (default is 0)
-B X Show region ending at X (default is last position)
-C Show Bankit comments
-G Output is one top bioseq only in genome view
-L F Use old (pre-Genbank 127.0) LOCUS line format
-M Output is map bioseqs only
-R For GenBank Release
-V F Don’t use VERSION
-a filename
  Filename for ASN.1 input (default is stdin)
-b Input asnfile in binary mode
-d Use SeqMgr indexing
-e Input is a Seq-entry
-f b/p/e/s/x/z
  Output Format:
b GenBank (default)
p GenPept
e EMBL
s PseudoEMBL
x GenBankSelect
z EMBLPEPT
-g Show gi numbers
-h F Hide sequence
-k F Don’t use complex sets (phy-set,mut-set, pop-set)
-l filename
  Log errors to filename
-m r/d/s/c/k/l/e/p
  Output mode:
r release (default)
d dump
s Sequin
c Chromoscope
k dir-sub-debug
l dir-sub
e revise
p partial report
-n F Strict gene_binding
-o filename
  Output Filename (default is stdout)
-p F Omit new gene features
-q Output is one top bioseq only
-r filename
  Output error logfile (default is stderr)
-s Input is a Seq-submit
-t Show verbose message text
-v F Suppress error messages
-w Use HTML output format
-y Print help format only
-z New algorithm for orgnames

AUTHOR

The National Center for Biotechnology Information.

SEE ALSO

asn2all(1), asn2asn(1), asn2fsa(1), asn2gb(1), asn2xml(1), asndhuff(1).
Search for    or go to Top of page |  Section 1 |  Main Index


NCBI ASN2FF (1) 2005-05-16

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