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Man Pages


Manual Reference Pages  -  ASN2IDX (1)

NAME

asn2idx - index ASN.1 Bioseq-sets for fast access to individual sequences

CONTENTS

Synopsis
Description
Options
Author
See Also

SYNOPSIS

asn2idx [-] [-b] [-d dir] [-f filter] -p path [-r path] [-t] [-x str]

DESCRIPTION

asn2idx indexes ASN.1 Bioseq-sets (such as GenBank release files) to speed retrieval of the individual sequences they contain. For each file that it processes, it yields an output file in the same directory with the extension .idx.

OPTIONS

A summary of options is included below.
- Print usage message
-b Bioseq-sets are Binary
-d dir Required Subdirectory
-f filter
  Filter (default = gbcon,gbest,gbgss,gbhtg,gbsts)
-p path Path to Files
-p path Path for Results
-t Recurse
-x str File Selection Substring (default = .aso)

AUTHOR

The National Center for Biotechnology Information.

SEE ALSO

asn2asn(1), asndhuff(1).
Search for    or go to Top of page |  Section 1 |  Main Index


NCBI ASN2IDX (1) 2008-12-13

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