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Man Pages


Manual Reference Pages  -  BP_AACOMP.PL (1)

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NAME

bp_aacomp - amino acid composition of protein sequences

CONTENTS

SYNOPSIS



  bp_aacomp [-f/--format FORMAT] [-h/--help] filename
  or
  bp_aacomp [-f/--format FORMAT] < filename
  or
  bp_aacomp [-f/--format FORMAT] -i filename



DESCRIPTION

This scripts prints out the count of amino acids over all protein sequences from the input file.

OPTIONS

The default sequence format is fasta.

The sequence input can be provided using any of the three methods:
unnamed argument


  bp_aacomp filename



named argument


  bp_aacomp -i filename



standard input


  bp_aacomp < filename



FEEDBACK

    Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.



  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists



    Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:



  https://github.com/bioperl/bioperl-live/issues



AUTHOR - Jason Stajich

Email jason@bioperl.org

HISTORY

Based on aacomp.c from an old version of EMBOSS
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