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Man Pages


Manual Reference Pages  -  BP_EXTRACT_FEATURE_SEQ.PL (1)

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NAME

bp_extract_feature_seq - extract the corresponding sequence for a specified feature type

CONTENTS

SYNOPSIS

bp_extract_feature_seq [--format FORMAT] [--feature CDS] [--output FILE] [--input] FILE

DESCRIPTION

This script will extract the sequence for all the features you specify.

OPTIONS

<B>-iB>, <B>--inputB> Specifies the sequence file to be read.
<B>--formatB> Format of the file specifed by <B>--inputB>. If not given, it will try to guess the correct format from the file extension.
<B>--featureB> Feature to be extracted. By default, it extracts the CDS feature.
<B>-oB>, <B>--outputB> File where the extracted features will be saved. If not specified, STDOUT is used.

FEEDBACK

    Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.



  L<bioperl-l@bioperl.org>                  - General discussion
  L<http://bioperl.org/wiki/Mailing_lists>  - About the mailing lists



    Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web:



  L<https://github.com/bioperl/bioperl-live/issues>



AUTHOR



 Jason Stajich <jason-at-bioperl-dot-org>



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perl v5.20.3 BP_EXTRACT_FEATURE_SEQ (1) 2016-04-05

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