GSP
Quick Navigator

Search Site

Unix VPS
A - Starter
B - Basic
C - Preferred
D - Commercial
MPS - Dedicated
Previous VPSs
* Sign Up! *

Support
Contact Us
Online Help
Handbooks
Domain Status
Man Pages

FAQ
Virtual Servers
Pricing
Billing
Technical

Network
Facilities
Connectivity
Topology Map

Miscellaneous
Server Agreement
Year 2038
Credits
 

USA Flag

 

 

Man Pages


Manual Reference Pages  -  BP_GENERATE_HISTOGRAM.PL (1)

.ds Aq ’

NAME

bp_generate_histogram.pl -- Generate a histogram of Bio::DB::GFF features

CONTENTS

SYNOPSIS



  bp_generate_histogram.pl -d gadfly variation gene:curated



DESCRIPTION

Use this utility to generate feature density histograms from Bio::DB::GFF databases. The result is a GFF data file that is suitable for loading with load_gff.pl.

    OPTIONS

The following options are recognized:



  Option        Description
  ------        -----------

   --dsn        <dsn>       Data source (default dbi:mysql:test)
   --adaptor    <adaptor>   Schema adaptor (default dbi::mysqlopt)
   --user       <user>      Username for mysql authentication
   --pass       <password>  Password for mysql authentication
   --aggregator <list>      Comma-separated list of aggregators



BUGS

Please report them.

SEE ALSO

Bio::DB::GFF

AUTHOR

Lincoln Stein <lstein@cshl.org>

Copyright (c) 2001 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.

Search for    or go to Top of page |  Section 1 |  Main Index


perl v5.20.3 BP_GENERATE_HISTOGRAM (1) 2016-04-05

Powered by GSP Visit the GSP FreeBSD Man Page Interface.
Output converted with manServer 1.07.