GSP
Quick Navigator

Search Site

Unix VPS
A - Starter
B - Basic
C - Preferred
D - Commercial
MPS - Dedicated
Previous VPSs
* Sign Up! *

Support
Contact Us
Online Help
Handbooks
Domain Status
Man Pages

FAQ
Virtual Servers
Pricing
Billing
Technical

Network
Facilities
Connectivity
Topology Map

Miscellaneous
Server Agreement
Year 2038
Credits
 

USA Flag

 

 

Man Pages


Manual Reference Pages  -  BP_MAKE_MRNA_PROTEIN.PL (1)

.ds Aq ’

NAME

bp_make_mrna_protein - Convert an input mRNA/cDNA sequence into protein

CONTENTS

DESCRIPTION

Convert an input mRNA/cDNA sequence into protein using translate()



  -f/--frame           Specifies frame [0,1,2]



One can also specify:



  -t/--terminator      Stop Codon character (defaults to *)
  -u/--unknown         Unknown Protein character (defaults to X)
  -cds/--fullcds       Expected Full CDS (with start and Stop codon)
  -throwOnError        Throw error if no Full CDS (defaults to 0)
  -if/--format         Input format (defaults to FASTA/Pearson)
  -of/--format         Output format (defaults to FASTA/Pearson)
  -o/--output          Output Filename (defaults to STDOUT)
  -i/--input           Input Filename (defaults to STDIN)
  -ct/--codontable     Codon table to use (defaults to 1)



See Bio::PrimarySeq for more information on codon tables and the translate() method

AUTHOR - Jason Stajich



  Email jason-at-bioperl-dot-org



Search for    or go to Top of page |  Section 1 |  Main Index


perl v5.20.3 BP_MAKE_MRNA_PROTEIN (1) 2016-04-05

Powered by GSP Visit the GSP FreeBSD Man Page Interface.
Output converted with manServer 1.07.