Manual Reference Pages - BP_OLIGO_COUNT.PL (1)
bp_oligo_count - oligo count and frequency
Usage: bp_oligo_count [-h/--help] [-l/--length OLIGOLENGTH]
[-f/--format SEQFORMAT] [-i/--in/-s/--sequence SEQFILE]
This scripts counts occurrence and frequency for all oligonucleotides
of given length.
It can be used to determine what primers are useful for
frequent priming of nucleic acid for random labeling.
Note that this script could be run by utilizing the compseq
program which is part of EMBOSS.
The default sequence format is fasta. If no outfile is given, the
results will be printed to standard out. All other options can entered
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list. Your participation is much appreciated.
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http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
AUTHOR - Charles C. Kim
Written July 2, 2001
Submitted to bioperl scripts project 2001/08/06
>> 100 x speed optimization by Heikki Lehvaslaiho
|perl v5.20.3 ||BP_OLIGO_COUNT (1) ||2016-04-05 |
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