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Man Pages


Manual Reference Pages  -  GMTSELECT (1)

NAME

gmtselect - Select data subsets based on multiple spatial criteria

CONTENTS

Synopsis
Description
Options
Ascii Format Precision
Note On Processing Ascii Input Records
Note On Distances
Examples
Gshhs Information

SYNOPSIS

gmtselect [ infiles ] [ -Amin_area[/min_level/max_level][+r|l][ppercent] ] [ -C[f]dist/ptfile ] [ -Dresolution[+] ] [ -Fpolygonfile ] [ -H[i][nrec] ] [ -I[cflrsz] ] [ -Jparameters ] [ -L[p]dist/linefile ] [ -Nmaskvalues[o] ] [ -Rwest/east/south/north[r] ] [ -V ] [ -Zmin/max] ] [ -:[i|o] ] [ -b[i|o][s|S|d|D[ncol]|c[var1/...]] ] [ -f[i|o]colinfo ] [ -m[i|o][flag] ]

DESCRIPTION

gmtselect is a filter that reads (longitude, latitude) positions from the first 2 columns of infiles [or standard input] and uses a combination of 1-6 criteria to pass or reject the records. Records can be selected based on whether or not they are 1) inside a rectangular region (-R [and -J]), 2) within dist km of any point in ptfile, 3) within dist km of any line in linefile, 4) inside one of the polygons in the polygonfile, 5) inside geographical features (based on coastlines), or 6) has z-values within a given range. The sense of the tests can be reversed for each of these 6 criteria by using the -I option. See option -: on how to read (latitude,longitude) files.
infiles
  ASCII (or binary, see -b) data file(s) to be operated on. If not given, standard input is read.

OPTIONS

No space between the option flag and the associated arguments.
-A Features with an area smaller than min_area in km^2 or of hierarchical level that is lower than min_level or higher than max_level will not be plotted [Default is 0/0/4 (all features)]. Level 2 (lakes) contains regular lakes and wide river bodies which we normally include as lakes; append +r to just get river-lakes or +l to just get regular lakes (requires GSHHS 2.0.1 or higher). Finally, append +ppercent to exclude polygons whose percentage area of the corresponding full-resolution feature is less than percent (requires GSHHS 2.0 or higher). See GSHHS INFORMATION below for more details. Ignored unless -N is set.
-C Pass all records whose location is within dist of any of the points in the ASCII file ptfile. If dist is zero then the 3rd column of ptfile must have each point’s individual radius of influence. Distances are Cartesian and in user units; specify -fg to indicate spherical distances in km. Use -Cf to indicate you want flat Earth distances (quicker but approximate) rather than geodesic distances (slower but exact). If ELLIPSOID is spherical then geodesics become great circles (faster to compute than geodesic). Alternatively, if -R and -J are used then geographic coordinates are projected to map coordinates (in cm, inch, m, or points, as determined by MEASURE_UNIT) before Cartesian distances are compared to dist.
-D Ignored unless -N is set. Selects the resolution of the coastline data set to use ((f)ull, (h)igh, (i)ntermediate, (l)ow, or (c)rude). The resolution drops off by ~80% between data sets. [Default is l]. Append + to automatically select a lower resolution should the one requested not be available [abort if not found]. Note that because the coastlines differ in details it is not guaranteed that a point will remain inside [or outside] when a different resolution is selected.
-F Pass all records whose location is within one of the closed polygons in the multiple-segment file polygonfile. For spherical polygons (lon, lat), make sure no consecutive points are separated by 180 degrees or more in longitude. Note that polygonfile must be in ASCII regardless of whether -b is used.
-H Input file(s) has header record(s). If used, the default number of header records is N_HEADER_RECS. Use -Hi if only input data should have header records [Default will write out header records if the input data have them]. Blank lines and lines starting with # are always skipped.
-I Reverses the sense of the test for each of the criteria specified:
        c select records NOT inside any point’s circle of influence.
        f select records NOT inside any of the polygons.
        l select records NOT within the specified distance of any line.
        r select records NOT inside the specified rectangular region.
        s select records NOT considered inside as specified by -N (and -A, -D).
        z select records NOT within the range specified by -Z.
-J Selects the map projection. Scale is UNIT/degree, 1:xxxxx, or width in UNIT (upper case modifier). UNIT is cm, inch, or m, depending on the MEASURE_UNIT setting in .gmtdefaults4, but this can be overridden on the command line by appending c, i, or m to the scale/width value. When central meridian is optional, default is center of longitude range on -R option. Default standard parallel is the equator. For map height, max dimension, or min dimension, append h, +, or - to the width, respectively.
More details can be found in the psbasemap man pages.

CYLINDRICAL PROJECTIONS:

-Jclon0/lat0/scale (Cassini)
-Jcyl_stere/[lon0/[lat0/]]scale (Cylindrical Stereographic)
-Jj[lon0/]scale (Miller)
-Jm[lon0/[lat0/]]scale (Mercator)
-Jmlon0/lat0/scale (Mercator - Give meridian and standard parallel)
-Jo[a]lon0/lat0/azimuth/scale (Oblique Mercator - point and azimuth)
-Jo[b]lon0/lat0/lon1/lat1/scale (Oblique Mercator - two points)
-Joclon0/lat0/lonp/latp/scale (Oblique Mercator - point and pole)
-Jq[lon0/[lat0/]]scale (Cylindrical Equidistant)
-Jtlon0/[lat0/]scale (TM - Transverse Mercator)
-Juzone/scale (UTM - Universal Transverse Mercator)
-Jy[lon0/[lat0/]]scale (Cylindrical Equal-Area)

CONIC PROJECTIONS:

-Jblon0/lat0/lat1/lat2/scale (Albers)
-Jdlon0/lat0/lat1/lat2/scale (Conic Equidistant)
-Jllon0/lat0/lat1/lat2/scale (Lambert Conic Conformal)
-Jpoly/[lon0/[lat0/]]scale ((American) Polyconic)

AZIMUTHAL PROJECTIONS:

-Jalon0/lat0[/horizon]/scale (Lambert Azimuthal Equal-Area)
-Jelon0/lat0[/horizon]/scale (Azimuthal Equidistant)
-Jflon0/lat0[/horizon]/scale (Gnomonic)
-Jglon0/lat0[/horizon]/scale (Orthographic)
-Jglon0/lat0/altitude/azimuth/tilt/twist/Width/Height/scale (General Perspective).
-Jslon0/lat0[/horizon]/scale (General Stereographic)

MISCELLANEOUS PROJECTIONS:

-Jh[lon0/]scale (Hammer)
-Ji[lon0/]scale (Sinusoidal)
-Jkf[lon0/]scale (Eckert IV)
-Jk[s][lon0/]scale (Eckert VI)
-Jn[lon0/]scale (Robinson)
-Jr[lon0/]scale (Winkel Tripel)
-Jv[lon0/]scale (Van der Grinten)
-Jw[lon0/]scale (Mollweide)

NON-GEOGRAPHICAL PROJECTIONS:

-Jp[a]scale[/origin][r|z] (Polar coordinates (theta,r))
-Jxx-scale[d|l|ppow|t|T][/y-scale[d|l|ppow|t|T]] (Linear, log, and power scaling)

-L Pass all records whose location is within dist of any of the line segments in the ASCII multiple-segment file linefile. If dist is zero then the 2nd column of each sub-header in the ptfile must have each lines’s individual distance value. Distances are Cartesian and in user units; specify -fg to indicate spherical distances in km. If ELLIPSOID is spherical then geodesics become great circles (faster to compute than geodesic). Alternatively, if -R and -J are used then geographic coordinates are projected to map coordinates (in cm, inch, m, or points, as determined by MEASURE_UNIT) before Cartesian distances are compared to dist. Use -Lp to ensure only points whose orthogonal projections onto the nearest line-segment fall within the segments endpoints [Default considers points "beyond" the line’s endpoints.
-N Pass all records whose location is inside specified geographical features. Specify if records should be skipped (s) or kept (k) using 1 of 2 formats:
        -Nwet/dry.
        -Nocean/land/lake/island/pond.
Append o to let points exactly on feature boundaries be considered outside the feature [Default is inside]. [Default is s/k/s/k/s (i.e., s/k), which passes all points on dry land].
-R xmin, xmax, ymin, and ymax specify the Region of interest. For geographic regions, these limits correspond to west, east, south, and north and you may specify them in decimal degrees or in [+-]dd:mm[:ss.xxx][W|E|S|N] format. Append r if lower left and upper right map coordinates are given instead of w/e/s/n. The two shorthands -Rg and -Rd stand for global domain (0/360 and -180/+180 in longitude respectively, with -90/+90 in latitude). Alternatively, specify the name of an existing grid file and the -R settings (and grid spacing, if applicable) are copied from the grid. For calendar time coordinates you may either give (a) relative time (relative to the selected TIME_EPOCH and in the selected TIME_UNIT; append t to -JX|x), or (b) absolute time of the form [date]T[clock] (append T to -JX|x). At least one of date and clock must be present; the T is always required. The date string must be of the form [-]yyyy[-mm[-dd]] (Gregorian calendar) or yyyy[-Www[-d]] (ISO week calendar), while the clock string must be of the form hh:mm:ss[.xxx]. The use of delimiters and their type and positions must be exactly as indicated (however, input, output and plot formats are customizable; see gmtdefaults). If no map projection is supplied we implicitly set -Jx 1. Note: only supply -J when your -R is indicating a rectangular region in the projected coordinates (i.e., an oblique projection).
-V Selects verbose mode, which will send progress reports to stderr [Default runs "silently"].
-Z Pass all records whose 3rd column (z) lies within the given range, or is NaN. Input file must have at least three columns. To indicate no limit on min or max, specify a hyphen (-). If your 3rd column is absolute time then remember to supply -f 2T.
-: Toggles between (longitude,latitude) and (latitude,longitude) input and/or output. [Default is (longitude,latitude)]. Append i to select input only or o to select output only. [Default affects both].
-bi Selects binary input. Append s for single precision [Default is d (double)]. Uppercase S or D will force byte-swapping. Optionally, append ncol, the number of columns in your binary input file if it exceeds the columns needed by the program. Or append c if the input file is netCDF. Optionally, append var1/var2/... to specify the variables to be read. [Default is 2 input columns].
-bo Selects binary output. Append s for single precision [Default is d (double)]. Uppercase S or D will force byte-swapping. Optionally, append ncol, the number of desired columns in your binary output file. [Default is same as input].
-f Special formatting of input and/or output columns (time or geographical data). Specify i or o to make this apply only to input or output [Default applies to both]. Give one or more columns (or column ranges) separated by commas. Append T (absolute calendar time), t (relative time in chosen TIME_UNIT since TIME_EPOCH), x (longitude), y (latitude), or f (floating point) to each column or column range item. Shorthand -f[i|o]g means -f[i|o]0x,1y (geographic coordinates).
-m Multiple segment file(s). Segments are separated by a special record. For ASCII files the first character must be flag [Default is ’>’]. For binary files all fields must be NaN and -b must set the number of output columns explicitly. By default the -m setting applies to both input and output. Use -mi and -mo to give separate settings to input and output. The -m option make sure that segment headers in the input files are copied to output, but it has no effect on the data selection. Selection is always done point by point, not by segment.

ASCII FORMAT PRECISION

The ASCII output formats of numerical data are controlled by parameters in your .gmtdefaults4 file. Longitude and latitude are formatted according to OUTPUT_DEGREE_FORMAT, whereas other values are formatted according to D_FORMAT. Be aware that the format in effect can lead to loss of precision in the output, which can lead to various problems downstream. If you find the output is not written with enough precision, consider switching to binary output (-bo if available) or specify more decimals using the D_FORMAT setting.
This note applies to ASCII output only in combination with binary or netCDF input or the -: option. See also the note below.

NOTE ON PROCESSING ASCII INPUT RECORDS

Unless you are using the -: option, selected ASCII input records are copied verbatim to output. That means that options like -foT and settings like D_FORMAT and OUTPUT_DEGREE_FORMAT will not have any effect on the output. On the other hand, it allows selecting records with diverse content, including character strings, quoted or not, comments, and other non-numerical content.

NOTE ON DISTANCES

If options -C or -L are selected then distances are Cartesian and in user units; use -fg to imply spherical distances in km and geographical (lon, lat) coordinates. Alternatively, specify -R and -J to measure projected Cartesian distances in map units (cm, inch, m, or points, as determined by MEASURE_UNIT).
This program has evolved over the years. Originally, the -R and -J were mandatory in order to handle geographic data, but now there is full support for spherical calculations. Thus, -J should only be used if you want the tests to be applied on projected data and not the original coordinates. If -J is used the distances given via -C and -L are projected distances.

EXAMPLES

To extract the subset of data set that is within 300 km of any of the points in pts.d but more than 100 km away from the lines in lines.d, run

gmtselect lonlatfile -fg -C 300/pts.d -L 100/lines.d -Il > subset

Here, you must specify -fg so the program knows you are processing geographical data (otherwise 300 would be interpreted as Cartesian distance in x-y units instead of km).

To keep all points in data.d within the specified region, except the points on land (as determined by the high-resolution coastlines), use

gmtselect data.d -R 120/121/22/24 -Dh -Nk/s > subset

To return all points in quakes.d that are inside the spherical polygon lonlatpath.d, try

gmtselect quakes.d -F lonlatpath.d -fg > subset1

To return all points in stations.d that are within 5 cm of the point in origin.d for a certain projection, try

gmtselect stations.d -F origin.d -R 20/50/-10/20 -JM 20c > subset2

GSHHS INFORMATION

The coastline database is GSHHS which is compiled from two sources: World Vector Shorelines (WVS) and CIA World Data Bank II (WDBII). In particular, all level-1 polygons (ocean-land boundary) are derived from the more accurate WVS while all higher level polygons (level 2-4, representing land/lake, lake/island-in-lake, and island-in-lake/lake-in-island-in-lake boundaries) are taken from WDBII. Much processing has taken place to convert WVS and WDBII data into usable form for GMT: assembling closed polygons from line segments, checking for duplicates, and correcting for crossings between polygons. The area of each polygon has been determined so that the user may choose not to draw features smaller than a minimum area (see -A); one may also limit the highest hierarchical level of polygons to be included (4 is the maximum). The 4 lower-resolution databases were derived from the full resolution database using the Douglas-Peucker line-simplification algorithm. The classification of rivers and borders follow that of the WDBII. See the GMT Cookbook and Technical Reference Appendix K for further details.

SEE ALSO

gmtdefaults(1), GMT(1), grdlandmask(1), pscoast(1)
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GMT 4.5.14 GMTSELECT (1) 1 Nov 2015

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