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Man Pages


Manual Reference Pages  -  GMX-WHEEL (1)

NAME

gmx-wheel - Plot helical wheels

CONTENTS

Synopsis
Description
Options
See Also

SYNOPSIS

gmx wheel [-f [<.dat>]] [-o [<.eps>]] [-nice <int>] [-r0 <int>]
[-rot0 <real>] [-T <string>] [-[no]nn]

DESCRIPTION

gmx wheel plots a helical wheel representation of your sequence. The input sequence is in the .dat file where the first line contains the number of residues and each consecutive line contains a residue name.

OPTIONS

Options to specify input and output files:

-f [<.dat>] (nnnice.dat) (Input)
Generic data file

-o [<.eps>] (plot.eps) (Output)
Encapsulated PostScript (tm) file

Other options:

-nice <int> (19)
Set the nicelevel

-r0 <int> (1)
The first residue number in the sequence

-rot0 <real> (0)
Rotate around an angle initially (90 degrees makes sense)

-T <string>
Plot a title in the center of the wheel (must be shorter than 10 characters, or it will overwrite the wheel)

-[no]nn (yes)
Toggle numbers

SEE ALSO

gromacs(7)

More information about GROMACS is available at <http://www.gromacs.org/>.

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VERSION 5.0.6 GMX-WHEEL (1)

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