Help; print a brief reminder of command line usage and all available
Output profiles in ASCII text format. This is the default.
Output profiles in binary format.
Output in legacy HMMER2 ASCII text format, in ls (glocal) mode. This
allows HMMER3 models to be converted back to a close approximation of
HMMER2, for comparative studies.
Output in a HMMER3 ASCII text format other then the most current one.
Valid choices for
<s> are 3/b or 3/a.
The current format is 3/b, and this is the default. There is a
slightly different format 3/a that was used in some alpha test code.
See hmmer(1) for a master man page with a list of all the individual man pages for programs in the HMMER package.
For complete documentation, see the user guide that came with your HMMER distribution (Userguide.pdf); or see the HMMER web page (@HMMER_URL@).
For additional information on copyright and licensing, see the file called COPYRIGHT in your HMMER source distribution, or see the HMMER web page (@HMMER_URL@).
Eddy/Rivas Laboratory Janelia Farm Research Campus 19700 Helix Drive Ashburn VA 20147 USA http://eddylab.org
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