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Man Pages


Manual Reference Pages  -  SRF2FASTA (1)

NAME

srf2fasta - Converts SRF files to fasta format

CONTENTS

SYNOPSIS

srf2fasta [-C] srf_archive

DESCRIPTION

srf2fasta extracts sequences from an SRF archive and writes them in fasta format to stdout.

OPTIONS

-C Masks out sequences tagged as bad quality.

EXAMPLES

To extract only the good quality sequences from runX.srf into runX.fasta.

    srf2fasta -C runX.srf > runX.fasta

AUTHOR

James Bonfield, Wellcome Trust Sanger Institute

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SRF2FASTA (1) September 19

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