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Manual Reference Pages  -  BIO::DB::GFF::AGGREGATOR::UCSC_REFGENE (3)

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NAME

Bio::DB::GFF::Aggregator::ucsc_refgene -- UCSC refGene aggregator

CONTENTS

SYNOPSIS



  use Bio::DB::GFF;

  # Open the sequence database
  my $db      = Bio::DB::GFF->new( -adaptor => dbi:mysql,
                                   -dsn     => dbi:mysql:elegans42,
                                   -aggregator => [transcript,clone],
                                 );

 -------------------------------------------------
 Aggregator method: refgene
 Main method:       transcript
 Sub methods:       refGene
 -------------------------------------------------



DESCRIPTION

Bio::DB::GFF::Aggregator::transcript

    method



 Title   : method
 Usage   : $aggregator->method
 Function: return the method for the composite object
 Returns : the string "refgene"
 Args    : none
 Status  : Public



    part_names



 Title   : part_names
 Usage   : $aggregator->part_names
 Function: return the methods for the sub-parts
 Returns : empty list
 Args    : none
 Status  : Public



    main_name



 Title   : main_name
 Usage   : $aggregator->main_name
 Function: return the method for the main component
 Returns : the string "transcript:refGene"
 Args    : none
 Status  : Public



BUGS

None reported.

SEE ALSO

Bio::DB::GFF, Bio::DB::GFF::Aggregator

AUTHOR

Allen Day <allenday@ucla.edu>.

Copyright (c) 2002 Allen Day, University of California, Los Angeles.

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

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perl v5.20.3 BIO::DB::GFF::AGGREGATOR::UCSC_REFGENE (3) 2016-04-05

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