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| Bio::Graphics::Glyph::heat_map_ideogram(3) | User Contributed Perl Documentation | Bio::Graphics::Glyph::heat_map_ideogram(3) |
NAME
Bio::Graphics::Glyph::heat_map_ideogram - The "heat_map_ideogram" glyphSYNOPSIS
See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.
DESCRIPTION
This glyph draws a chromosome ideogram using scored features instead of cytobands. It is a hybrid of the heat_map and ideograms glyphs and accepts options for both. A typical usage would be to pair this glyph with an aggregator that groups scored features such as blast hits or gene_density bins, etc with a centromere. The result is a chromosome ideogram that has bands whose colors vary porportionate to the feature score.OPTIONS
See Bio::Graphics::Glyph for a full explanation of standard options.See Bio::Graphics::Glyph::heat_map for an explanation of heat_map options.
See Bio::Graphics::Glyph::ideogram for an explanation of ideogram options.
BUGS
Please report them.SEE ALSO
Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GDAUTHOR
Sheldon McKay <mckays@cshl.edu>Copyright (c) 2006 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.
| 2022-05-14 | perl v5.32.1 |
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