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Manual Reference Pages  -  BIO::GRAPHICS::GLYPH::LIGHTNING (3)

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NAME

Bio::Graphics::Glyph::lightning - The "lightning" glyph

CONTENTS

SYNOPSIS



  See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.



DESCRIPTION

This glyph draws a lightning bolt of specified height with relative width, with the point of the lightning bolt centered on the feature. The height of the bolt is specified by the height option. Due to the complexity of this glyph, it doesn’t resolve well with heights less than 11 pixels.

This glyph was designed to indicate point mutations on a nucleotide or protein backbone.

    OPTIONS

The following options are standard among all Glyphs. See Bio::Graphics::Glyph for a full explanation.



  Option      Description                      Default
  ------      -----------                      -------

  -fgcolor      Foreground color               black

  -outlinecolor Synonym for -fgcolor

  -bgcolor      Background color               turquoise

  -fillcolor    Synonym for -bgcolor

  -linewidth    Line width                     1

  -height       Height of glyph                10

  -font         Glyph font                     gdSmallFont

  -connector    Connector type                 0 (false)

  -connector_color
                Connector color                black

  -label        Whether to draw a label        0 (false)

  -description  Whether to draw a description  0 (false)

  -hilite       Highlight color                undef (no color)



The following options are specific to this Glyph.



  Option      Description                      Default
  ------      -----------                      ------- 
  -orient     direction of lightning bolt      N



BUGS

No reported bugs.

SEE ALSO

Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::Graphics::Glyph::arrow, Bio::Graphics::Glyph::cds, Bio::Graphics::Glyph::crossbox, Bio::Graphics::Glyph::diamond, Bio::Graphics::Glyph::dna, Bio::Graphics::Glyph::dot, Bio::Graphics::Glyph::ellipse, Bio::Graphics::Glyph::extending_arrow, Bio::Graphics::Glyph::generic, Bio::Graphics::Glyph::graded_segments, Bio::Graphics::Glyph::heterogeneous_segments, Bio::Graphics::Glyph::line, Bio::Graphics::Glyph::pinsertion, Bio::Graphics::Glyph::primers, Bio::Graphics::Glyph::rndrect, Bio::Graphics::Glyph::segments, Bio::Graphics::Glyph::ruler_arrow, Bio::Graphics::Glyph::toomany, Bio::Graphics::Glyph::transcript, Bio::Graphics::Glyph::transcript2, Bio::Graphics::Glyph::translation, Bio::Graphics::Glyph::triangle, Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GD

AUTHOR

Todd Harris <harris@cshl.org>

Copyright (c) 2004 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.

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perl v5.20.3 BIO::GRAPHICS::GLYPH::LIGHTNING (3) 2016-04-05

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