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Manual Reference Pages  -  BIO::GRAPHICS::GLYPH::SPLICE_SITE (3)

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NAME

Bio::Graphics::Glyph::splice_site - The "splice_site" glyph

CONTENTS

SYNOPSIS



  See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.



DESCRIPTION

This glyph was designed to show an inverted L representing splice donors and acceptors. The vertical part of the L points downwards and is positioned in the center of the range (even if the range is quite large).

In addition to the usual glyph options, this glyph recognizes:



   Option            Value              Description
   ------            -----              -----------

   direction         "left" or "right"  direction the short part of the L
                                        points

   height_fraction   0.0 - 1.0          fractional height of the glyph,
                                        usually a callback that uses the
                                        features score to determine its
                                        height



BUGS

Please report them.

SEE ALSO

Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::Graphics::Glyph::arrow, Bio::Graphics::Glyph::cds, Bio::Graphics::Glyph::crossbox, Bio::Graphics::Glyph::diamond, Bio::Graphics::Glyph::dna, Bio::Graphics::Glyph::dot, Bio::Graphics::Glyph::ellipse, Bio::Graphics::Glyph::extending_arrow, Bio::Graphics::Glyph::generic, Bio::Graphics::Glyph::graded_segments, Bio::Graphics::Glyph::heterogeneous_segments, Bio::Graphics::Glyph::line, Bio::Graphics::Glyph::pinsertion, Bio::Graphics::Glyph::primers, Bio::Graphics::Glyph::rndrect, Bio::Graphics::Glyph::chromosome, Bio::Graphics::Glyph::segments, Bio::Graphics::Glyph::ruler_arrow, Bio::Graphics::Glyph::toomany, Bio::Graphics::Glyph::transcript, Bio::Graphics::Glyph::transcript2, Bio::Graphics::Glyph::translation, Bio::Graphics::Glyph::triangle, Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GD

AUTHOR

Xiaokang Pan <pan@cshl.org>

Copyright (c) 2001 BDGP

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.

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perl v5.20.3 BIO::GRAPHICS::GLYPH::SPLICE_SITE (3) 2016-04-05

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