Manual Reference Pages - BIO::MAGETAB::UTIL::REWRITEAE (3)
Bio::MAGETAB::Util::RewriteAE - A utility class providing methods to
correct some common errors in ArrayExpress MAGE-TAB documents.
my $rw = Bio::MAGETAB::Util::RewriteAE->new();
$rw->rewrite_sdrf( $sdrf );
$rw->rewrite_idf( $idf );
At the time of writing, many ArrayExpress MAGE-TAB documents do not
fully comply with the latest MAGE-TAB specification, and this class
can be used to rewrite such documents prior to import with the main
Bio::MAGETAB classes. Typically the order of rewriting should be as
shown in the SYNOPSIS, with the SDRF being rewritten first. This is so
the RewriteAE object can record all the Term Sources referenced by the
SDRF and make sure they are all declared in the IDF.
Given the name of an SDRF file, overwrite said file with a fixed copy.
Given the name of an IDF file, overwrite said file with a fixed copy.
Tim F. Rayner <email@example.com>
This library is released under version 2 of the GNU General Public
|perl v5.20.3 ||BIO::MAGETAB::UTIL::REWRITEAE (3) ||2013-01-13 |
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