GSP
Quick Navigator

Search Site

Unix VPS
A - Starter
B - Basic
C - Preferred
D - Commercial
MPS - Dedicated
Previous VPSs
* Sign Up! *

Support
Contact Us
Online Help
Handbooks
Domain Status
Man Pages

FAQ
Virtual Servers
Pricing
Billing
Technical

Network
Facilities
Connectivity
Topology Map

Miscellaneous
Server Agreement
Year 2038
Credits
 

USA Flag

 

 

Man Pages


Manual Reference Pages  -  BIO::ONTOLOGY::OBOTERM (3)

.ds Aq ’

NAME

Bio::Ontology::OBOterm - representation of OBO terms

CONTENTS

SYNOPSIS



  $term = Bio::Ontology::OBOterm->new
    ( -identifier       => "GO:0005623",
      -name        => "Cell",
      -definition  => "The basic structural and functional unit ...",
      -is_obsolete => 0,
      -comment     => "" );

  $term->add_reference( @refs );
  $term->add_secondary_id( @ids );
  $term->add_synonym( @synonym );

  # etc.



DESCRIPTION

This is data holder class for OBO terms. It is currently a dummy class since we anticipate that the OBO term will become more richer with more features being added to OBO flat-file format.

FEEDBACK

    Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.



  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists



    Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

    Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:



  https://github.com/bioperl/bioperl-live/issues



AUTHOR

Sohel Merchant

Email: s-merchant@northwestern.edu

Address:



  Northwestern University
  Center for Genetic Medicine (CGM), dictyBase
  Suite 1206,
  676 St. Clair st
  Chicago IL 60611



APPENDIX

The rest of the documentation details each of the object methods.

    new



 Title   : new
 Usage   :   $term = Bio::Ontology::OBOterm->new
     ( -identifier       => "GO:0005623",
      -name        => "Cell",
      -definition  => "The basic structural and functional unit ...",
      -is_obsolete => 0,
      -comment     => "" );

 Function: Creates a new Bio::Ontology::OBOterm.
 Returns : A new Bio::Ontology::OBOterm object.
 Args    : -identifier    => the id of this OBO term [GO:nnnnnnn]
                             integer of seven digits)
           -name          => the name of this OBO term [scalar]
           -definition    => the definition of this OBO term [scalar]
           -ontology      => the ontology for this term (a
                             Bio::Ontology::OntologyI compliant object)
           -version       => version information [scalar]
           -is_obsolete   => the obsoleteness of this OBO term [0 or 1]
           -comment       => a comment [scalar]



Search for    or go to Top of page |  Section 3 |  Main Index


perl v5.20.3 BIO::ONTOLOGY::OBOTERM (3) 2016-04-05

Powered by GSP Visit the GSP FreeBSD Man Page Interface.
Output converted with manServer 1.07.