Manual Reference Pages - BIO::PHYLO::PARSERS::NEXUS (3)
Bio::Phylo::Parsers::Nexus - Parser used by Bio::Phylo::IO, no serviceable parts inside
This module parses nexus files. It is called by the Bio::Phylo::IO module,
there is no direct usage. The parser can handle files and strings with multiple
tree, taxon, and characters blocks whose links are defined using Mesquites
TITLE = some_name and LINK TAXA = some_name tokens.
The parser returns a reference to an array containing one or more taxa, trees
and matrices objects. Nexus comments are stripped, private nexus blocks (and the
assumptions block) are skipped. It currently doesnt handle mixed data.
There is a mailing list at <https://groups.google.com/forum/#!forum/bio-phylo>
for any user or developer questions and discussions.
If you use Bio::Phylo in published research, please cite it:
<B>Rutger A VosB>, <B>Jason CaravasB>, <B>Klaas HartmannB>, <B>Mark A JensenB>
and <B>Chase MillerB>, 2011. Bio::Phylo - phyloinformatic analysis using Perl.
BMC Bioinformatics <B>12B>:63.
|perl v5.20.3 ||BIO::PHYLO::PARSERS::NEXUS (3) ||2014-03-18 |
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