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Manual Reference Pages  -  BIO::PHYLO::PHYLOWS::SERVICE::TIMETREE (3)

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NAME

Bio::Phylo::PhyloWS::Service::Timetree - PhyloWS service wrapper for Timetree

CONTENTS

SYNOPSIS



 # inside a CGI script:
 use CGI;
 use Bio::Phylo::PhyloWS::Service::Timetree;

 my $cgi = CGI->new;
 my $service = Bio::Phylo::PhyloWS::Service::Timetree->new( -url => $url );
 $service->handle_request($cgi);



DESCRIPTION

This is an example implementation of a PhyloWS service. The service wraps around the timetree web site (using screen scraping) and returns project objects that include a tree for every search result.

METHODS

    ACCESSORS

get_query_result() Gets a phylows cql query result



 Type    : Accessor
 Title   : get_query_result
 Usage   : my $result = $obj->get_query_result( $query );
 Function: Gets a query result
 Returns : Bio::Phylo::Project
 Args    : Required: $query



get_supported_formats() Gets an array ref of supported formats



 Type    : Accessor
 Title   : get_supported_formats
 Usage   : my @formats = @{ $obj->get_supported_formats };
 Function: Gets an array ref of supported formats
 Returns : [ qw(nexml nexus newick html) ]
 Args    : NONE



get_redirect() Gets a redirect URL if relevant



 Type    : Accessor
 Title   : get_redirect
 Usage   : my $url = $obj->get_redirect;
 Function: Gets a redirect URL if relevant
 Returns : String
 Args    : $cgi
 Comments: This method is called by handle_request so that
           services can 303 redirect a record lookup to
           another URL. By default, this method returns
           undef (i.e. no redirect), but if this implementation
           is called to handle a request that specifies
           format=html the request is forwarded to the
           appropriate page on the http://timetree.org website



SEE ALSO

There is a mailing list at <https://groups.google.com/forum/#!forum/bio-phylo> for any user or developer questions and discussions.

Also see the manual: Bio::Phylo::Manual and <http://rutgervos.blogspot.com>

CITATION

If you use Bio::Phylo in published research, please cite it:

<B>Rutger A VosB>, <B>Jason CaravasB>, <B>Klaas HartmannB>, <B>Mark A JensenB> and <B>Chase MillerB>, 2011. Bio::Phylo - phyloinformatic analysis using Perl. BMC Bioinformatics <B>12B>:63. <http://dx.doi.org/10.1186/1471-2105-12-63>

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perl v5.20.3 BIO::PHYLO::PHYLOWS::SERVICE::TIMETREE (3) 2014-02-08

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