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Bio::Search::HSP::HSPFactory(3) User Contributed Perl Documentation Bio::Search::HSP::HSPFactory(3)

Bio::Search::HSP::HSPFactory - A factory to create Bio::Search::HSP::HSPI objects

    use Bio::Search::HSP::HSPFactory;
    my $factory = Bio::Search::HSP::HSPFactory->new();
    my $resultobj = $factory->create(@args);

This is a general way of hiding the object creation process so that we can dynamically change the objects that are created by the SearchIO parser depending on what format report we are parsing.

This object is for creating new HSPs.

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  https://github.com/bioperl/bioperl-live/issues

Email jason-at-bioperl.org

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

 Title   : new
 Usage   : my $obj = Bio::Search::HSP::HSPFactory->new();
 Function: Builds a new Bio::Search::HSP::HSPFactory object 
 Returns : Bio::Search::HSP::HSPFactory
 Args    :

 Title   : create
 Usage   : $factory->create(%args)
 Function: Create a new L<Bio::Search::HSP::HSPI> object  
 Returns : L<Bio::Search::HSP::HSPI>
 Args    : hash of initialization parameters

 Title   : type
 Usage   : $factory->type('Bio::Search::HSP::GenericHSP');
 Function: Get/Set the HSP creation type
 Returns : string
 Args    : [optional] string to set
2019-12-07 perl v5.32.1

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