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Manual Reference Pages  -  BIO::SEARCH::HSP::HSPFACTORY (3)

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NAME

Bio::Search::HSP::HSPFactory - A factory to create Bio::Search::HSP::HSPI objects

CONTENTS

SYNOPSIS



    use Bio::Search::HSP::HSPFactory;
    my $factory = Bio::Search::HSP::HSPFactory->new();
    my $resultobj = $factory->create(@args);



DESCRIPTION

This is a general way of hiding the object creation process so that we can dynamically change the objects that are created by the SearchIO parser depending on what format report we are parsing.

This object is for creating new HSPs.

FEEDBACK

    Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.



  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists



    Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

    Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:



  https://github.com/bioperl/bioperl-live/issues



AUTHOR - Jason Stajich

Email jason-at-bioperl.org

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

    new



 Title   : new
 Usage   : my $obj = Bio::Search::HSP::HSPFactory->new();
 Function: Builds a new Bio::Search::HSP::HSPFactory object
 Returns : Bio::Search::HSP::HSPFactory
 Args    :



    create



 Title   : create
 Usage   : $factory->create(%args)
 Function: Create a new L<Bio::Search::HSP::HSPI> object 
 Returns : L<Bio::Search::HSP::HSPI>
 Args    : hash of initialization parameters



    type



 Title   : type
 Usage   : $factory->type(Bio::Search::HSP::GenericHSP);
 Function: Get/Set the HSP creation type
 Returns : string
 Args    : [optional] string to set



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perl v5.20.3 BIO::SEARCH::HSP::HSPFACTORY (3) 2016-04-05

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