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Manual Reference Pages  -  BIO::SEARCH::HIT::FASTA (3)

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NAME

Bio::Search::Hit::Fasta - Hit object specific for Fasta-generated hits

CONTENTS

SYNOPSIS



  # You wouldnt normally create these manually;
  # instead they would be produced by Bio::SearchIO::fasta

  use Bio::Search::Hit::Fasta;
  my $hit = Bio::Search::Hit::Fasta->new(id=>LBL_6321, desc=>lipoprotein, e_val=>0.01);



DESCRIPTION

Bio::Search::Hit::HitI objects are data structures that contain information about specific hits obtained during a library search. Some information will be algorithm-specific, but others will be generally defined, such as the ability to obtain alignment objects corresponding to each hit.

SEE ALSO

Bio::Search::Hit::HitI, Bio::Search::Hit::GenericHit, Bio::SearchIO::fasta.

FEEDBACK

    Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably
to one of the Bioperl mailing lists. Your participation is much appreciated.



  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists



    Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

    Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:



  https://github.com/bioperl/bioperl-live/issues



AUTHOR - Aaron Mackey

Email amackey-at-virginia.edu

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

    _initialize



 Function: where the heavy stuff will happen when new is called



    AUTOLOAD



 Function: Provide getter/setters for ID,DESC,SIZE,INITN,INIT1,OPT,ZSC,E_VAL



Search for    or go to Top of page |  Section 3 |  Main Index


perl v5.20.3 BIO::SEARCH::HIT::FASTA (3) 2016-04-05

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