Manual Reference Pages - BIO::SEARCH::HIT::FASTA (3)
Bio::Search::Hit::Fasta - Hit object specific for Fasta-generated hits
# You wouldnt normally create these manually;
# instead they would be produced by Bio::SearchIO::fasta
my $hit = Bio::Search::Hit::Fasta->new(id=>LBL_6321, desc=>lipoprotein, e_val=>0.01);
Bio::Search::Hit::HitI objects are data structures that contain information
about specific hits obtained during a library search. Some information will
be algorithm-specific, but others will be generally defined, such as the
ability to obtain alignment objects corresponding to each hit.
User feedback is an integral part of the evolution of this
and other Bioperl modules. Send your comments and suggestions preferably
to one of the Bioperl mailing lists.
Your participation is much appreciated.
email@example.com - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
AUTHOR - Aaron Mackey
The rest of the documentation details each of the object
methods. Internal methods are usually preceded with a _
Function: where the heavy stuff will happen when new is called
Function: Provide getter/setters for ID,DESC,SIZE,INITN,INIT1,OPT,ZSC,E_VAL
|perl v5.20.3 ||BIO::SEARCH::HIT::FASTA (3) ||2016-04-05 |
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