Manual Reference Pages - BIO::SEARCH::RESULT::WABARESULT (3)
Bio::Search::Result::WABAResult - Result object for WABA alignment output
# use this object exactly as you would a GenericResult
# the only extra method is query_database which is the
# name of the file where the query sequence came from
This object is for WABA result output, there is little difference
between this object and a GenericResult save the addition of one
method query_database. Expect many of the fields for GenericResult to
be empty however as WABA was not intended to provide a lot of extra
information other than the alignment.
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AUTHOR - Jason Stajich
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
Title : new
Usage : my $obj = Bio::Search::Result::WABAResult->new();
Function: Builds a new Bio::Search::Result::WABAResult object
Returns : Bio::Search::Result::WABAResult
Args : -query_database => "name of the database where the query came from"
Title : query_database
Usage : $obj->query_database($newval)
Function: Data field for the database filename where the
query sequence came from
Returns : value of query_database
Args : newvalue (optional)
See the Bio::Search::Result::GenericResult for complete
documentation of the rest of the methods that are available for this
|perl v5.20.3 ||BIO::SEARCH::RESULT::WABARESULT (3) ||2016-04-05 |
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