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Manual Reference Pages  -  BIO::SEARCHIO::WRITER::BSMLRESULTWRITER (3)

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NAME

Bio::SearchIO::Writer::BSMLResultWriter - BSML output writer

CONTENTS

SYNOPSIS



  use Bio::SearchIO;
  my $in = Bio::SearchIO->new(-file   => result.blast,
                             -format => blast);
  my $out = Bio::SearchIO->new(-output_format  => BSMLResultWriter,
                              -file           => ">result.bsml");
  while( my $r = $in->next_result ) {
    $out->write_result($r);
  }



DESCRIPTION

This is a writer to produce BSML for a search result.

FEEDBACK

    Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.



  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists



    Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

    Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:



  https://github.com/bioperl/bioperl-live/issues



AUTHOR - Jason Stajich

Email jason-at-bioperl-dot-org

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

    new



 Title   : new
 Usage   : my $obj = Bio::SearchIO::Writer::BSMLResultWriter->new();
 Function: Builds a new Bio::SearchIO::Writer::BSMLResultWriter object
 Returns : an instance of Bio::SearchIO::Writer::BSMLResultWriter
 Args    :



    to_string



 Purpose   : Produces data for each Search::Result::ResultI in a string.
           : This is an abstract method. For some useful implementations,
           : see ResultTableWriter.pm, HitTableWriter.pm,
           : and HSPTableWriter.pm.
 Usage     : print $writer->to_string( $result_obj, @args );
 Argument  : $result_obj = A Bio::Search::Result::ResultI object
           : @args = any additional arguments used by your implementation.
 Returns   : String containing data for each search Result or any of its
           : sub-objects (Hits and HSPs).
 Throws    : n/a



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perl v5.20.3 BIO::SEARCHIO::WRITER::BSMLRESULTWRITER (3) 2016-04-05

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