Manual Reference Pages - BIO::SEQ::SEQFACTORY (3)
Bio::Seq::SeqFactory - Instantiation of generic Bio::PrimarySeqI (or derived) objects through a factory
my $factory = Bio::Seq::SeqFactory->new();
my $primaryseq = $factory->create( -seq => WYRAVLC,
-id => name );
# Create Bio::Seq instead of Bio::PrimarySeq objects:
my $factory = Bio::Seq::SeqFactory->new( -type => Bio::Seq );
This object will build Bio::PrimarySeqI and Bio::SeqI objects
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list. Your participation is much appreciated.
email@example.com - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
AUTHOR - Jason Stajich
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
Title : new
Usage : my $obj = Bio::Seq::SeqFactory->new();
Function: Builds a new Bio::Seq::SeqFactory object
Returns : Bio::Seq::SeqFactory
Args : -type => string, name of a PrimarySeqI derived class
This is optional. Default=Bio::PrimarySeq.
Title : create
Usage : my $seq = $seqbuilder->create(-seq => CAGT, -id => name);
Function: Instantiates new Bio::SeqI (or one of its child classes)
This object allows us to genericize the instantiation of sequence
Returns : Bio::PrimarySeq object (default)
The return type is configurable using new(-type =>"...").
Args : initialization parameters specific to the type of sequence
object we want. Typically
-seq => $str,
-display_id => $name
Title : type
Usage : $obj->type($newval)
Returns : value of type
Args : newvalue (optional)
|perl v5.20.3 ||BIO::SEQ::SEQFACTORY (3) ||2016-04-05 |
Visit the GSP FreeBSD Man Page Interface.
Output converted with manServer 1.07.