Manual Reference Pages - BIO::SEQ::SEQFASTASPEEDFACTORY (3)
Bio::Seq::SeqFastaSpeedFactory - Rapid creation of Bio::Seq objects through a factory
my $factory = Bio::Seq::SeqFastaSpeedFactory->new();
my $seq = $factory->create( -seq => WYRAVLC,
-id => name );
This factory was designed to build Bio::Seq objects as quickly as possible, but
is not as generic as Bio::Seq::SeqFactory. It can be used to create sequences
from non-rich file formats. The Bio::SeqIO::fasta sequence parser uses this
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AUTHOR - Jason Stajich
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
Title : new
Usage : my $obj = Bio::Seq::SeqFastaSpeedFactory->new();
Function: Builds a new Bio::Seq::SeqFastaSpeedFactory object
Returns : Bio::Seq::SeqFastaSpeedFactory
Args : None
Title : create
Usage : my $seq = $seqbuilder->create(-seq => CAGT, -id => name);
Function: Instantiates a new Bio::Seq object, correctly built but very
fast, knowing stuff about Bio::PrimarySeq and Bio::Seq
Returns : A Bio::Seq object
Args : Initialization parameters for the sequence object we want:
|perl v5.20.3 ||BIO::SEQ::SEQFASTASPEEDFACTORY (3) ||2016-04-05 |
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