Manual Reference Pages - BIO::SEQIO::ABI (3)
Bio::SeqIO::abi - abi trace sequence input/output stream
Do not use this module directly. Use it via the Bio::SeqIO class.
This object can transform Bio::Seq objects to and from abi trace
files. To optionally read the trace graph data (which can be used
to draw chromatographs, for instance), set the optional
-get_trace_data flag or the get_trace_data method to a value
evaluating to TRUE.
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to one
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Please direct usage questions or support issues to the mailing list:
rather than to the module maintainer directly. Many experienced and
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address it. Please include a thorough description of the problem
with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track
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Bug reports can be submitted via the web:
AUTHORS - Aaron Mackey
The rest of the documentation details each of the object
methods. Internal methods are usually preceded with a _
Title : next_seq
Usage : $seq = $stream->next_seq()
Function: returns the next sequence in the stream
Returns : Bio::Seq::Quality object
Args : NONE
Title : write_seq
Usage : $stream->write_seq(@seq)
Function: writes the $seq object into the stream
Returns : 1 for success and 0 for error
Args : Bio::Seq object
Title : get_trace_data
Usage : $stream->get_trace_data(1)
Function: set boolean flag to retrieve the trace data (possibly for
Returns : bool value, TRUE = retrieve trace data (default FALSE)
Args : bool value
|perl v5.20.3 ||BIO::SEQIO::ABI (3) ||2016-04-05 |
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