GSP
Quick Navigator

Search Site

Unix VPS
A - Starter
B - Basic
C - Preferred
D - Commercial
MPS - Dedicated
Previous VPSs
* Sign Up! *

Support
Contact Us
Online Help
Handbooks
Domain Status
Man Pages

FAQ
Virtual Servers
Pricing
Billing
Technical

Network
Facilities
Connectivity
Topology Map

Miscellaneous
Server Agreement
Year 2038
Credits
 

USA Flag

 

 

Man Pages


Manual Reference Pages  -  BIO::TOOLS::PRINTS (3)

.ds Aq ’

NAME

Bio::Tools::Prints - Parser for FingerPRINTScanII program

CONTENTS

SYNOPSIS



  use Bio::Tools::Prints;
  my $prints_parser = Bio::Tools::Prints->new(-fh =>$filehandle );
  while( my $prints_feat = $prints_parser->next_result ) {
        push @prints_feat, $prints_feat;
  }



DESCRIPTION



 PRINTScan II is a PRINTS fingerprint identification algorithm.
 Copyright (C) 1998,1999  Phil Scordis



FEEDBACK

    Mailing Lists



 User feedback is an integral part of the evolution of this and other
 Bioperl modules. Send your comments and suggestions preferably to
 the Bioperl mailing list.  Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists



    Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

    Reporting Bugs



 Report bugs to the Bioperl bug tracking system to help us keep track
 of the bugs and their resolution. Bug reports can be submitted via
 the web:

  https://github.com/bioperl/bioperl-live/issues



AUTHOR - Balamurugan Kumarasamy



 bala@tll.org.sg
 juguang@tll.org.sg



APPENDIX



 The rest of the documentation details each of the object methods.
 Internal methods are usually preceded with a _



    new



 Title   : new
 Usage   : my $obj = Bio::Tools::Prints->new(-fh=>$filehandle);
 Function: Builds a new Bio::Tools::Prints object
 Returns : Bio::Tools::Prints
 Args    : -filename
           -fh (filehandle)



    next_result



 Title   : next_result
 Usage   : my $feat = $prints_parser->next_result
 Function: Get the next result set from parser data
 Returns : L<Bio::SeqFeature::Generic>
 Args    : none



    create_feature



 Title   : create_feature
 Usage   : my $feat=$prints_parser->create_feature($feature,$seqname)
 Function: creates a SeqFeature Generic object
 Returns : L<Bio::SeqFeature::FeaturePair>
 Args    :



    print_sac



 Title   : print_sac
 Usage   : $prints_parser->print_sac($print_sac)
 Function: get/set for print_sac
 Returns :
 Args    :



    seqname



 Title   : seqname
 Usage   : $prints_parser->seqname($seqname)
 Function: get/set for seqname
 Returns :
 Args    :



Search for    or go to Top of page |  Section 3 |  Main Index


perl v5.20.3 BIO::TOOLS::PRINTS (3) 2016-04-05

Powered by GSP Visit the GSP FreeBSD Man Page Interface.
Output converted with manServer 1.07.