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Manual Reference Pages  -  BIO::TOOLS::PROSITESCAN (3)

.ds Aq ’

NAME

Bio::Tools::PrositeScan - Parser for ps_scan result

CONTENTS

SYNOPSIS



  use Bio::Tools::PrositeScan;

  my $factory = Bio::Tools::PrositeScan->new(
      -file => out.PrositeScan
  );

  while(my $match = $factory->next_prediction){
      #  $match is of Bio::SeqFeature::FeaturePair
      my $q_id = $fatch->feature1->seq_id;
      my $h_id = $fatch->feature2->seq_id;
  }



DESCRIPTION

This is the parser of the output of ps_scan program. It takes either a file handler or a file name, and returns a Bio::SeqFeature::FeaturePair object.

AUTHOR

Juguang Xiao, juguang@tll.org.sg

    new



  Title   : new
  Usage   : Bio::Tools::PrositeScan->new(-file => out.PrositeScan);
            Bio::Tools::PrositeScan->new(-fh => \*FH);
  Returns : L<Bio::Tools::PrositeScan>



    next_prediction



  Title   : new
  Usage   :
      while($result = $factory->next_prediction){
          ;
      }

  Returns : a Bio::SeqFeature::FeaturePair object



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perl v5.20.3 BIO::TOOLS::PROSITESCAN (3) 2016-04-05

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