Manual Reference Pages - BIO::TREE::NODENHX (3)
Bio::Tree::NodeNHX - A Simple Tree Node with support for NHX tags
my $nodeA = Bio::Tree::NodeNHX->new();
my $nodeL = Bio::Tree::NodeNHX->new();
my $nodeR = Bio::Tree::NodeNHX->new();
my $node = Bio::Tree::NodeNHX->new();
print "node is not a leaf \n" if( $node->is_leaf);
Makes a Tree Node with NHX tags, suitable for building a Tree. See
Bio::Tree::Node for a full list of functionality.
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AUTHOR - Aaron Mackey
The NHX (New Hampshire eXtended) format was created by Chris Zmasek,
and is described at:
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
Title : new
Usage : my $obj = Bio::Tree::NodeNHX->new();
Function: Builds a new Bio::Tree::NodeNHX object
Returns : Bio::Tree::NodeNHX
Args : -left => pointer to Left descendent (optional)
-right => pointer to Right descenent (optional)
-branch_length => branch length [integer] (optional)
-bootstrap => bootstrap value (string)
-description => description of node
-id => unique id for node
-nhx => hashref of NHX tags and values
Title : nhx_tag
Usage : my $tag = $nodenhx->nhx_tag(%tags);
Function: Set tag-value pairs for NHX nodes
Returns : none
Args : hashref to update the tags/value pairs
with a scalar value update the bootstrap value by default
|perl v5.20.3 ||BIO::TREE::NODENHX (3) ||2016-04-05 |
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