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Manual Reference Pages  -  BIO::TREEIO::NEXML (3)

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NAME

Bio::TreeIO::nexml - A TreeIO driver module for parsing NeXML tree files

CONTENTS

SYNOPSIS



  use Bio::TreeIO;
  my $in = Bio::TreeIO->new(-file => data.nexml -format => Nexml);
  while( my $tree = $in->next_tree ) {
  }



DESCRIPTION

This is a driver module for parsing tree data in a NeXML format. For more information on NeXML, visit <http://www.nexml.org>.

FEEDBACK

    Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.



  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists



    Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

    Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:



  https://github.com/bioperl/bioperl-live/issues



AUTHOR - Chase Miller

Email chmille4@gmail.com

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

    next_tree



 Title   : next_tree
 Usage   : my $tree = $treeio->next_tree
 Function: Gets the next tree in the stream
 Returns : L<Bio::Tree::TreeI>
 Args    : none



    doc



 Title   : doc
 Usage   : $treeio->doc
 Function: Returns the biophylo nexml document object
 Returns : Bio::Phylo::Project
 Args    : none or Bio::Phylo::Project object



    rewind



 Title   : rewind
 Usage   : $treeio->rewind
 Function: Resets the stream
 Returns : none
 Args    : none



    write_tree



 Title   : write_tree
 Usage   : $treeio->write_tree($tree);
 Function: Writes a tree onto the stream
 Returns : none
 Args    : L<Bio::Tree::TreeI>



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perl v5.20.3 BIO::TREEIO::NEXML (3) 2016-04-05

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