Manual Reference Pages - BIO::VARIATION::IO::XML (3)
Bio::Variation::IO::xml - XML sequence variation input/output stream
Do not use this module directly. Use it via the Bio::Variation::IO class.
This object can transform Bio::Variation::SeqDiff objects to and from XML
The XML format, although consistent, is still evolving. The current
DTD for it is at <http://www.ebi.ac.uk/mutations/DTDE/seqDiff.dtd>.
To use this code you need the module XML::Twig which creates an
interface to XML::Parser to read XML and modules XML::Writer and
IO::String to write XML out.
User feedback is an integral part of the evolution of this and other
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rather than to the module maintainer directly. Many experienced and
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AUTHOR - Heikki Lehvaslaiho
The rest of the documentation details each of the object
methods. Internal methods are usually preceded with a _
Title : next
Usage : $haplo = $stream->next()
Function: returns the next seqDiff in the stream
Returns : Bio::Variation::SeqDiff object
Args : NONE
Title : write
Usage : $stream->write(@haplos)
Function: writes the $seqDiff objects into the stream
Returns : 1 for success and 0 for error
Args : Bio::Variation::SeqDiff object
|perl v5.20.3 ||BIO::VARIATION::IO::XML (3) ||2016-04-05 |
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