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Manual Reference Pages  -  ACE::GRAPHICS::GLYPH::TRANSCRIPT (3)

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NAME

Ace::Graphics::Glyph::transcript - The "gene" glyph

CONTENTS

SYNOPSIS



  See L<Ace::Graphics::Panel> and L<Ace::Graphics::Glyph>.



DESCRIPTION

This glyph draws a series of filled rectangles connected by up-angled connectors or hats. The rectangles indicate exons; the hats are introns. The direction of transcription is indicated by a small arrow at the end of the glyph, rightward for the + strand.

The feature must respond to the exons() and optionally introns() methods, or it will default to the generic display. Implied introns (not returned by the introns() method) are drawn in a contrasting color to explicit introns.

    OPTIONS

In addition to the common options, the following glyph-specific option is recognized:



  Option                Description                    Default
  ------                -----------                    -------

  -implied_intron_color The color to use for gaps      gray
                        not returned by the introns()
                        method.

  -draw_arrow           Whether to draw arrowhead      true
                        indicating direction of
                        transcription.



BUGS

Please report them.

SEE ALSO

Ace::Sequence, Ace::Sequence::Feature, Ace::Graphics::Panel, Ace::Graphics::Track, Ace::Graphics::Glyph::anchored_arrow, Ace::Graphics::Glyph::arrow, Ace::Graphics::Glyph::box, Ace::Graphics::Glyph::primers, Ace::Graphics::Glyph::segments, Ace::Graphics::Glyph::toomany, Ace::Graphics::Glyph::transcript,

AUTHOR

Lincoln Stein <lstein@cshl.org>.

Copyright (c) 2001 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.

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perl v5.20.3 ACE::GRAPHICS::GLYPH::TRANSCRIPT (3) 2001-05-22

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