|The new() constructor||
The new() constructor method all the arguments recognized by
Bio::DB::SeqFeature::Store, and a few additional ones.
To create an empty database which will be populated using calls to store() or new_feature(), or which will be bulk-loaded using the GFF3 loader:
To open a preexisting database in read-only mode:
To monitor a set of GFF3 and FASTA files located in a directory and create/update the database indexes as needed. The indexes will be stored in a new subdirectory named indexes:
As above, but store the source files and index files in separate directories:
To be indexed, files must end with one of .gff3 (GFF3 format), .fa (FASTA format) or .wig (WIG format).
This is an early version, so there are certainly some bugs. Please use the BioPerl bug tracking system to report bugs.
bioperl, Bio::DB::SeqFeature, Bio::DB::SeqFeature::Store, Bio::DB::SeqFeature::GFF3Loader, Bio::DB::SeqFeature::Segment, Bio::DB::SeqFeature::Store::memory, Bio::DB::SeqFeature::Store::DBI::mysql,
Lincoln Stein <firstname.lastname@example.org>.
Copyright (c) 2006 Cold Spring Harbor Laboratory.
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
|perl v5.20.3||BIO::DB::SEQFEATURE::STORE::BERKELEYDB (3)||2016-04-05|