GSP
Quick Navigator

Search Site

Unix VPS
A - Starter
B - Basic
C - Preferred
D - Commercial
MPS - Dedicated
Previous VPSs
* Sign Up! *

Support
Contact Us
Online Help
Handbooks
Domain Status
Man Pages

FAQ
Virtual Servers
Pricing
Billing
Technical

Network
Facilities
Connectivity
Topology Map

Miscellaneous
Server Agreement
Year 2038
Credits
 

USA Flag

 

 

Man Pages


Manual Reference Pages  -  BIO::FACTORY::FTLOCATIONFACTORY (3)

.ds Aq ’

NAME

Bio::Factory::FTLocationFactory - A FeatureTable Location Parser

CONTENTS

SYNOPSIS



    # parse a string into a location object
    $loc = Bio::Factory::FTLocationFactory->from_string("join(100..200,
                                                         400..500");



DESCRIPTION

Implementation of string-encoded location parsing for the Genbank feature table encoding of locations.

FEEDBACK

    Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.



  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists



    Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

    Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:



  https://github.com/bioperl/bioperl-live/issues



AUTHOR - Hilmar Lapp

Email hlapp at gmx.net

CONTRIBUTORS

Jason Stajich, jason-at-bioperl-dot-org Chris Fields, cjfields-at-uiuc-dot-edu

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

    new



 Title   : new
 Usage   : my $obj = Bio::Factory::FTLocationFactory->new();
 Function: Builds a new Bio::Factory::FTLocationFactory object
 Returns : an instance of Bio::Factory::FTLocationFactory
 Args    :



    from_string



 Title   : from_string
 Usage   : $loc = $locfactory->from_string("100..200");
 Function: Parses the given string and returns a Bio::LocationI implementing
           object representing the location encoded by the string.

           This implementation parses the Genbank feature table
           encoding of locations.
 Example :
 Returns : A Bio::LocationI implementing object.
 Args    : A string.



    _parse_location



 Title   : _parse_location
 Usage   : $loc = $locfactory->_parse_location( $loc_string)

 Function: Parses the given location string and returns a location object
           with start() and end() and strand() set appropriately.
           Note that this method is private.
 Returns : A Bio::LocationI implementing object or undef on failure
 Args    : location string



Search for    or go to Top of page |  Section 3 |  Main Index


perl v5.20.3 BIO::FACTORY::FTLOCATIONFACTORY (3) 2016-04-05

Powered by GSP Visit the GSP FreeBSD Man Page Interface.
Output converted with manServer 1.07.