Manual Reference Pages - BIO::MAGETAB::SDRFROW (3)
Bio::MAGETAB::SDRFRow - MAGE-TAB SDRF row class
This class is used to describe the rows in a given MAGE-TAB SDRF
document. Links between Nodes, channel and FactorValue are handled by
this class. See the BaseClass class for superclass methods, and the
SDRF class for its add_nodes method which can be used to
automatically sort Nodes into SDRFRows.
A list of Node objects associated with this SDRF row (data type:
The number of this row within the SDRF. Rows are assumed to be
numbered from top to bottom, starting at one for the first data
row; however this is not constrained by the model and you may use
whatever local conventions you prefer (data type: Integer).
A list of FactorValues associated with this row (data type:
The channel used when labeling and scanning for this row (e.g. Cy3,
biotin, alexa_588), usually taken from a suitable ontology (data
Each attribute has accessor (get_*) and mutator (set_*) methods, and
also predicate (has_*) and clearer (clear_*) methods where the
attribute is optional. Where an attribute represents a one-to-many
relationship the mutator accepts an arrayref and the accessor returns
Tim F. Rayner <email@example.com>
This library is released under version 2 of the GNU General Public
|perl v5.20.3 ||BIO::MAGETAB::SDRFROW (3) ||2013-01-13 |
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