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Manual Reference Pages  -  BIO::PHYLO::TAXA::TAXONLINKER (3)

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NAME

Bio::Phylo::Taxa::TaxonLinker - Superclass for objects that link to taxon objects

CONTENTS

SYNOPSIS



 use Bio::Phylo::Factory;
 my $fac = Bio::Phylo::Factory->new;

 my $node  = $fac->create_node;
 my $taxon = $fac->create_taxon;

 # just to show whos what
 if ( $node->isa(Bio::Phylo::Taxa::TaxonLinker) ) {
    $node->set_taxon( $taxon );
 }

 # prints Bio::Phylo::Taxa::Taxon
 print ref $node->get_taxon



DESCRIPTION

This module is a superclass for objects that link to Bio::Phylo::Taxa::Taxon objects.

METHODS

    MUTATORS

set_taxon() Links the invocant object to a taxon object.



 Type    : Mutator
 Title   : set_taxon
 Usage   : $obj->set_taxon( $taxon );
 Function: Links the invocant object
           to a taxon object.
 Returns : Modified $obj
 Args    : A Bio::Phylo::Taxa::Taxon object.



unset_taxon() Unlinks the invocant object from any taxon object.



 Type    : Mutator
 Title   : unset_taxon
 Usage   : $obj->unset_taxon();
 Function: Unlinks the invocant object
           from any taxon object.
 Returns : Modified $obj
 Args    : NONE



    ACCESSORS

get_taxon() Retrieves the Bio::Phylo::Taxa::Taxon object linked to the invocant.



 Type    : Accessor
 Title   : get_taxon
 Usage   : my $taxon = $obj->get_taxon;
 Function: Retrieves the Bio::Phylo::Taxa::Taxon
           object linked to the invocant.
 Returns : Bio::Phylo::Taxa::Taxon
 Args    : NONE
 Comments:



SEE ALSO

There is a mailing list at <https://groups.google.com/forum/#!forum/bio-phylo> for any user or developer questions and discussions.
Bio::Phylo::Matrices::Datum The datum object subclasses Bio::Phylo::Taxa::TaxonLinker.
Bio::Phylo::Forest::Node The node object subclasses Bio::Phylo::Taxa::TaxonLinker.
Bio::Phylo::Manual Also see the manual: Bio::Phylo::Manual and <http://rutgervos.blogspot.com>.

CITATION

If you use Bio::Phylo in published research, please cite it:

<B>Rutger A VosB>, <B>Jason CaravasB>, <B>Klaas HartmannB>, <B>Mark A JensenB> and <B>Chase MillerB>, 2011. Bio::Phylo - phyloinformatic analysis using Perl. BMC Bioinformatics <B>12B>:63. <http://dx.doi.org/10.1186/1471-2105-12-63>

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perl v5.20.3 BIO::PHYLO::TAXA::TAXONLINKER (3) 2014-02-08

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