GSP
Quick Navigator

Search Site

Unix VPS
A - Starter
B - Basic
C - Preferred
D - Commercial
MPS - Dedicated
Previous VPSs
* Sign Up! *

Support
Contact Us
Online Help
Handbooks
Domain Status
Man Pages

FAQ
Virtual Servers
Pricing
Billing
Technical

Network
Facilities
Connectivity
Topology Map

Miscellaneous
Server Agreement
Year 2038
Credits
 

USA Flag

 

 

Man Pages
Bio::Phylo::Taxa::TaxonLinker(3) User Contributed Perl Documentation Bio::Phylo::Taxa::TaxonLinker(3)

Bio::Phylo::Taxa::TaxonLinker - Superclass for objects that link to taxon objects

 use Bio::Phylo::Factory;
 my $fac = Bio::Phylo::Factory->new;

 my $node  = $fac->create_node;
 my $taxon = $fac->create_taxon;

 # just to show who's what
 if ( $node->isa('Bio::Phylo::Taxa::TaxonLinker') ) { 
    $node->set_taxon( $taxon );
 }
 
 # prints 'Bio::Phylo::Taxa::Taxon'
 print ref $node->get_taxon

This module is a superclass for objects that link to Bio::Phylo::Taxa::Taxon objects.

set_taxon()
Links the invocant object to a taxon object.

 Type    : Mutator
 Title   : set_taxon
 Usage   : $obj->set_taxon( $taxon );
 Function: Links the invocant object
           to a taxon object.
 Returns : Modified $obj
 Args    : A Bio::Phylo::Taxa::Taxon object.
    
unset_taxon()
Unlinks the invocant object from any taxon object.

 Type    : Mutator
 Title   : unset_taxon
 Usage   : $obj->unset_taxon();
 Function: Unlinks the invocant object
           from any taxon object.
 Returns : Modified $obj
 Args    : NONE
    

get_taxon()
Retrieves the Bio::Phylo::Taxa::Taxon object linked to the invocant.

 Type    : Accessor
 Title   : get_taxon
 Usage   : my $taxon = $obj->get_taxon;
 Function: Retrieves the Bio::Phylo::Taxa::Taxon
           object linked to the invocant.
 Returns : Bio::Phylo::Taxa::Taxon
 Args    : NONE
 Comments:
    

There is a mailing list at <https://groups.google.com/forum/#!forum/bio-phylo> for any user or developer questions and discussions.
Bio::Phylo::Matrices::Datum
The datum object subclasses Bio::Phylo::Taxa::TaxonLinker.
Bio::Phylo::Forest::Node
The node object subclasses Bio::Phylo::Taxa::TaxonLinker.
Bio::Phylo::Manual
Also see the manual: Bio::Phylo::Manual and <http://rutgervos.blogspot.com>.

If you use Bio::Phylo in published research, please cite it:

Rutger A Vos, Jason Caravas, Klaas Hartmann, Mark A Jensen and Chase Miller, 2011. Bio::Phylo - phyloinformatic analysis using Perl. BMC Bioinformatics 12:63. <http://dx.doi.org/10.1186/1471-2105-12-63>

2017-10-30 perl v5.32.1

Search for    or go to Top of page |  Section 3 |  Main Index

Powered by GSP Visit the GSP FreeBSD Man Page Interface.
Output converted with ManDoc.