Manual Reference Pages - BIO::RESTRICTION::ENZYME::MULTISITE (3)
Bio::Restriction::Enzyme::MultiSite - A single restriction endonuclease
# set up a single restriction enzyme. This contains lots of
# information about the enzyme that is generally parsed from a
# rebase file and can then be read back
This module is used for restriction enzymes that recogonize more than
one site. There are some enzymes that recognize sites that cannot be
represented by the ambiguous genetic code. For example, M.PhiBssHII
recognizes the sites: ACGCGT,CCGCGG,RGCGCY,RCCGGY, and GCGCGC
Each site gets its own object that Bio::Restriction::Enzyme will
refer to. Each also correlates with the other sites using the
method others which stores references to other objects
with alternative sites.
In this schema each object within an EnzymeCollection can be checked
for matching a sequence.
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
firstname.lastname@example.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
Heikki Lehvaslaiho, heikki-at-bioperl-dot-org
Rob Edwards, email@example.com
Copyright (c) 2003 Rob Edwards.
Some of this work is Copyright (c) 1997-2002 Steve A. Chervitz. All
Rights Reserved. This module is free software; you can redistribute
it and/or modify it under the same terms as Perl itself.
Methods beginning with a leading underscore are considered private and
are intended for internal use by this module. They are not considered
part of the public interface and are described here for documentation
Title : new
Function : Initializes the enzyme object
Returns : The Restriction::Enzyme::MultiSite object
Title : others
Usage : $re->others(@others);
Function : Gets/Sets the a list of other sites that this enzyme recoginizes
Arguments : An array containing the other Bio::Restriction::Enzyme::MultiSite
Returns : An array containing the other Bio::Restriction::Enzyme::MultiSite
Title : purge_others
Usage : $re->purge_references();
Function : Purges the set of references for this enzyme
|perl v5.20.3 ||BIO::RESTRICTION::ENZYME::MULTISITE (3) ||2016-04-05 |
Visit the GSP FreeBSD Man Page Interface.
Output converted with manServer 1.07.