Manual Reference Pages - BIO::SEQ::SEQFACTORY (3)
Bio::Seq::SeqFactory - Instantiation of generic Bio::PrimarySeqI (or derived) objects through a factory
my $factory = Bio::Seq::SeqFactory->new();
my $primaryseq = $factory->create( -seq => WYRAVLC,
-id => name );
# Create Bio::Seq instead of Bio::PrimarySeq objects:
my $factory = Bio::Seq::SeqFactory->new( -type => Bio::Seq );
This object will build Bio::PrimarySeqI and Bio::SeqI objects
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AUTHOR - Jason Stajich
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
Title : new
Usage : my $obj = Bio::Seq::SeqFactory->new();
Function: Builds a new Bio::Seq::SeqFactory object
Returns : Bio::Seq::SeqFactory
Args : -type => string, name of a PrimarySeqI derived class
This is optional. Default=Bio::PrimarySeq.
Title : create
Usage : my $seq = $seqbuilder->create(-seq => CAGT, -id => name);
Function: Instantiates new Bio::SeqI (or one of its child classes)
This object allows us to genericize the instantiation of sequence
Returns : Bio::PrimarySeq object (default)
The return type is configurable using new(-type =>"...").
Args : initialization parameters specific to the type of sequence
object we want. Typically
-seq => $str,
-display_id => $name
Title : type
Usage : $obj->type($newval)
Returns : value of type
Args : newvalue (optional)
|perl v5.20.3 ||BIO::SEQ::SEQFACTORY (3) ||2016-04-05 |
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