GSP
Quick Navigator

Search Site

Unix VPS
A - Starter
B - Basic
C - Preferred
D - Commercial
MPS - Dedicated
Previous VPSs
* Sign Up! *

Support
Contact Us
Online Help
Handbooks
Domain Status
Man Pages

FAQ
Virtual Servers
Pricing
Billing
Technical

Network
Facilities
Connectivity
Topology Map

Miscellaneous
Server Agreement
Year 2038
Credits
 

USA Flag

 

 

Man Pages


Manual Reference Pages  -  BIO::STRUCTURE::MODEL (3)

.ds Aq ’

NAME

Bio::Structure::Model - Bioperl structure Object, describes a Model

CONTENTS

SYNOPSIS



  #add synopsis here



DESCRIPTION

This object stores a Bio::Structure::Chain

FEEDBACK

    Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.



  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists



    Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

    Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:



  https://github.com/bioperl/bioperl-live/issues



AUTHOR - Kris Boulez

Email kris.boulez@algonomics.com

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new()



 Title   : new()
 Usage   : $struc = Bio::Structure::Model->new(
                                           -id  => human_id,
                                           );

 Function: Returns a new Bio::Structure::Model object from basic
        constructors. Probably most called from Bio::Structure::IO.
 Returns : a new Bio::Structure::Model object



chain()



 Title   : chain
 Usage   :
 Function: will eventually allow parent/child navigation not via an Entry object
 Returns :
 Args    :



add_chain()



 Title   : add_chain
 Usage   :
 Function:  will eventually allow parent/child navigation not via an Entry object
 Returns :
 Args    :



entry()



 Title   : entry
 Usage   :
 Function:  will eventually allow parent/child navigation not via an Entry object
 Returns :
 Args    :



id()



 Title   : id
 Usage   : $model->id("model 5")
 Function: Gets/sets the ID for this model
 Returns : the ID
 Args    : the ID



residue()



 Title   : residue
 Usage   :
 Function:  will eventually allow parent/child navigation not via an Entry object
 Returns :
 Args    :



add_residue()



 Title   : add_residue
 Usage   :
 Function:  will eventually allow parent/child navigation not via an Entry object
 Returns :
 Args    :



_remove_chains()



 Title   : _remove_chains
 Usage   :
 Function: Removes the chains attached to a Model. Tells the chains they
        dont belong to this Model any more
 Returns :
 Args    :



_remove_entry()



 Title   : _remove_entry
 Usage   :
 Function: Removes the Entry this Model is atttached to.
 Returns :
 Args    :



_create_default_chain()



 Title   : _create_default_chain
 Usage   :
 Function: Creates a default Chain for this Model. Typical situation
        in an X-ray structure where there is only one chain
 Returns :
 Args    :



_grandparent()



 Title   : _grandparent
 Usage   :
 Function: get/set a symbolic reference to our grandparent
 Returns :
 Args    :



Search for    or go to Top of page |  Section 3 |  Main Index


perl v5.20.3 BIO::STRUCTURE::MODEL (3) 2016-04-05

Powered by GSP Visit the GSP FreeBSD Man Page Interface.
Output converted with manServer 1.07.