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Manual Reference Pages  -  BIO::TOOLS::PHYLO::PHYLIP::PROTDIST (3)

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NAME

Bio::Tools::Phylo::Phylip::ProtDist - parser for ProtDist output

CONTENTS

SYNOPSIS



    use Bio::Tools::Phylo::Phylip::ProtDist;
    my $parser = Bio::Tools::Phylo::Phylip::ProtDist->new(-file => outfile);
    while( my $result = $parser->next_matrix) {
      # do something with it
    }



DESCRIPTION

A parser for ProtDist output into a Bio::Matrix::PhylipDist object. See also Bio::Matrix::IO::phylip this module may go away.

FEEDBACK

    Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.



  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists



    Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

    Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:



  https://github.com/bioperl/bioperl-live/issues



AUTHOR - Shawn Hoon

Email shawnh@fugu-sg.org

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

    new



 Title   : new
 Usage   : my $obj = Bio::Tools::Phylo::Phylip::ProtDist->new();
 Function: Builds a new Bio::Tools::Phylo::Phylip::ProtDist object
 Returns : Bio::Tools::ProtDist
 Args    : -fh/-file => $val, # for initing input, see Bio::Root::IO
           -program  => programname # name of the program



    next_matrix



 Title   : next_matrix
 Usage   : my $matrix = $parser->next_matrix
 Function: Get the next result set from parser data
 Returns : L<Bio::Matrix::PhylipDist>
 Args    : none



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perl v5.20.3 BIO::TOOLS::PHYLO::PHYLIP::PROTDIST (3) 2016-04-05

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