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Bio::DB::GFF::Aggregator::ucsc_ensgene(3) User Contributed Perl Documentation Bio::DB::GFF::Aggregator::ucsc_ensgene(3)
 

Bio::DB::GFF::Aggregator::ucsc_ensgene -- UCSC ensGene aggregator

  use Bio::DB::GFF;
  # Open the sequence database
  my $db      = Bio::DB::GFF->new( -adaptor => 'dbi:mysql',
                                   -dsn     => 'dbi:mysql:elegans42',
                                   -aggregator => ['transcript','clone'],
                                 );
 -------------------------------------------------
 Aggregator method: ensgene
 Main method:       transcript
 Sub methods:       ensGene
 -------------------------------------------------

Bio::DB::GFF::Aggregator::transcript

 Title   : method
 Usage   : $aggregator->method
 Function: return the method for the composite object
 Returns : the string "ensgene"
 Args    : none
 Status  : Public

 Title   : part_names
 Usage   : $aggregator->part_names
 Function: return the methods for the sub-parts
 Returns : empty list
 Args    : none
 Status  : Public

 Title   : main_name
 Usage   : $aggregator->main_name
 Function: return the method for the main component
 Returns : the string "transcript:ensGene"
 Args    : none
 Status  : Public

None reported.

Bio::DB::GFF, Bio::DB::GFF::Aggregator

Allen Day <allenday@ucla.edu>.
Copyright (c) 2002 Allen Day, University of California, Los Angeles.
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
2019-01-01 perl v5.28.1

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