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rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

  https://github.com/bioperl/bioperl-live/issues

new

 Title   : new
 Usage   : $term = Bio::Ontology::InterProTerm->new( -interpro_id => "IPR000002",
                                                     -name => "Cdc20/Fizzy",
                                                     -definition => "The Cdc20/Fizzy region is almost always ...",
                                                     -ontology => "Domain"
                                                   );

 Function: Creates a new Bio::Ontology::InterProTerm.
 Example :
 Returns : A new Bio::Ontology::InterProTerm object.
 Args    :
  -interpro_id => the InterPro ID of the term. Has the form IPRdddddd, where dddddd is a zero-padded six digit number
  -name => the name of this InterPro term [scalar]
  -definition => the definition/abstract of this InterPro term [scalar]
  -ontology => ontology of InterPro terms [Bio::Ontology::OntologyI]
  -comment => a comment [scalar]

init

 Title   : init
 Usage   : $term->init();
 Function: Initializes this InterProTerm to all "" and empty lists.
 Example :
 Returns : 
 Args    :

_check_interpro_id

 Title   : _check_interpro_id
 Usage   :
 Function: Performs simple check in order to validate that its argument has the form IPRdddddd, where dddddd is a zero-padded six digit number.
 Example :
 Returns : Returns its argument if valid, otherwise throws exception.
 Args    : String

interpro_id

 Title   : interpro_id
 Usage   : $obj->interpro_id($newval)
 Function: Set/get for the interpro_id of this InterProTerm
 Example : 
 Returns : value of interpro_id (a scalar)
 Args    : new value (a scalar, optional)

short_name

 Title   : short_name
 Usage   : $obj->short_name($newval)
 Function: Set/get for the short name of this InterProTerm.
 Example : 
 Returns : value of short_name (a scalar)
 Args    : new value (a scalar, optional)

protein_count

 Title   : protein_count
 Usage   : $obj->protein_count($newval)
 Function: Set/get for the protein count of this InterProTerm.
 Example : 
 Returns : value of protein_count (a scalar)
 Args    : new value (a scalar, optional)

get_references

 Title   : get_references
 Usage   :
 Function: Get the references for this InterPro term.
 Example :
 Returns : An array of L<Bio::Annotation::Reference> objects
 Args    :

add_reference

 Title   : add_reference
 Usage   :
 Function: Add one or more references to this InterPro term.
 Example :
 Returns : 
 Args    : One or more L<Bio::Annotation::Reference> objects.

remove_references

 Title   : remove_references
 Usage   :
 Function: Remove all references for this InterPro term.
 Example :
 Returns : The list of previous references as an array of
           L<Bio::Annotation::Reference> objects.
 Args    :

get_members

 Title   : get_members
 Usage   : @arr = get_members()
 Function: Get the list of member(s) for this object.
 Example :
 Returns : An array of Bio::Annotation::DBLink objects
 Args    :

add_member

 Title   : add_member
 Usage   :
 Function: Add one or more member(s) to this object.
 Example :
 Returns : 
 Args    : One or more Bio::Annotation::DBLink objects.

remove_members

 Title   : remove_members
 Usage   :
 Function: Remove all members for this class.
 Example :
 Returns : The list of previous members as an array of
           Bio::Annotation::DBLink objects.
 Args    :

get_examples

 Title   : get_examples
 Usage   : @arr = get_examples()
 Function: Get the list of example(s) for this object.

           This is an element of the InterPro xml schema.

 Example :
 Returns : An array of Bio::Annotation::DBLink objects
 Args    :

add_example

 Title   : add_example
 Usage   :
 Function: Add one or more example(s) to this object.

           This is an element of the InterPro xml schema.

 Example :
 Returns : 
 Args    : One or more Bio::Annotation::DBLink objects.

remove_examples

 Title   : remove_examples
 Usage   :
 Function: Remove all examples for this class.

           This is an element of the InterPro xml schema.

 Example :
 Returns : The list of previous examples as an array of
           Bio::Annotation::DBLink objects.
 Args    :

get_external_documents

 Title   : get_external_documents
 Usage   : @arr = get_external_documents()
 Function: Get the list of external_document(s) for this object.

           This is an element of the InterPro xml schema.

 Example :
 Returns : An array of Bio::Annotation::DBLink objects
 Args    :

add_external_document

 Title   : add_external_document
 Usage   :
 Function: Add one or more external_document(s) to this object.

           This is an element of the InterPro xml schema.

 Example :
 Returns : 
 Args    : One or more Bio::Annotation::DBLink objects.

remove_external_documents

 Title   : remove_external_documents
 Usage   :
 Function: Remove all external_documents for this class.

           This is an element of the InterPro xml schema.

 Example :
 Returns : The list of previous external_documents as an array of
           Bio::Annotation::DBLink objects.
 Args    :

class_list

 Title   : class_list
 Usage   : $obj->class_list($newval)
 Function: Set/get for class list element of the InterPro xml schema
 Example : 
 Returns : reference to an array of Bio::Annotation::DBLink objects
 Args    : reference to an array of Bio::Annotation::DBLink objects

to_string

 Title   : to_string()
 Usage   : print $term->to_string();
 Function: to_string method for InterPro terms.
 Returns : A string representation of this InterPro term.
 Args    :

secondary_ids

 Title   : secondary_ids
 Usage   : $obj->secondary_ids($newval)
 Function: This is deprecated. Use get_secondary_ids() or 
           add_secondary_id() instead.
 Example : 
 Returns : reference to an array of strings
 Args    : reference to an array of strings