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Man Pages
Bio::Phenotype::Measure(3) User Contributed Perl Documentation Bio::Phenotype::Measure(3)
 

Bio::Phenotype::Measure - Representation of context/value(-range)/unit triplets

  use Bio::Phenotype::Measure;
  my $measure = Bio::Phenotype::Measure->new( -context     => "length",
                                              -description => "reduced length in 4(Tas1r3)",
                                              -start       => 0,
                                              -end         => 15,
                                              -unit        => "mm",
                                              -comment     => "see also Miller et al" );
  print $measure->context();
  print $measure->description();
  print $measure->start();
  print $measure->end();
  print $measure->unit();
  print $measure->comment();
  print $measure->to_string();

Measure is for biochemically defined phenotypes or any other types of measures.

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.
  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:
  https://github.com/bioperl/bioperl-live/issues

Christian M. Zmasek
Email: czmasek-at-burnham.org or cmzmasek@yahoo.com
WWW: http://monochrome-effect.net/
Address:
  Genomics Institute of the Novartis Research Foundation
  10675 John Jay Hopkins Drive
  San Diego, CA 92121

The rest of the documentation details each of the object methods.

 Title   : new
 Usage   : my $me = Bio::Phenotype::Measure->new( -context     => "length",
                                                  -description => "reduced length in 4(Tas1r3)",
                                                  -start       => 0,
                                                  -end         => 15,
                                                  -unit        => "mm",
                                                  -comment     => "see Miller also et al" );                      
 Function: Creates a new Measure object.
 Returns : A new Measure object.
 Args    : -context     => the context
           -description => a description
           -start       => the start value
           -end         => the end value
           -unit        => the unit
           -comment     => a comment

 Title   : init()
 Usage   : $measure->init();   
 Function: Initializes this Measure to all "".
 Returns : 
 Args    :

 Title   : context
 Usage   : $measure->context( "Ca-conc" );
           or 
           print $measure->context(); 
 Function: Set/get for the context of this Measure.
 Returns : The context.
 Args    : The context (optional).

 Title   : description
 Usage   : $measure->description( "reduced in 4(Tas1r3)" );
           or 
           print $measure->description(); 
 Function: Set/get for the description of this Measure.
 Returns : A description.
 Args    : A description (optional).

 Title   : start
 Usage   : $measure->start( 330 );
           or 
           print $measure->start(); 
 Function: Set/get for the start value of this Measure.
 Returns : The start value.
 Args    : The start value (optional).

 Title   : end 
 Usage   : $measure->end( 459 );
           or 
           print $measure->end(); 
 Function: Set/get for the end value of this Measure.
 Returns : The end value.
 Args    : The end value (optional).

 Title   : unit
 Usage   : $measure->unit( "mM" );
           or 
           print $measure->unit(); 
 Function: Set/get for the unit of this Measure.
 Returns : The unit.
 Args    : The unit (optional).

 Title   : comment
 Usage   : $measure->comment( "see also Miller et al" );
           or 
           print $measure->comment();
 Function: Set/get for an arbitrary comment about this Measure.
 Returns : A comment.
 Args    : A comment (optional).

 Title   : to_string()
 Usage   : print $measure->to_string();
 Function: To string method for Measure objects.
 Returns : A string representations of this Measure.
 Args    :
2019-01-01 perl v5.28.1

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