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| blt chrom-lens(1) | FreeBSD General Commands Manual | blt chrom-lens(1) |
SYNOPSIS
blt chrom-lens < file.fasta
DESCRIPTION
blt chrom-lens Generates TSV (tab separated values) output containing chromosome names and lengths as required by kallisto and other tools. Since the lengths are taken directly from the FASTA reference file, this eliminates the need to locate and trust other sources of this information.EXAMPLES
blt chrom-lens < file.fasta xzcat file.fasta.xz | blt chrom-lens
SEE ALSO
blt(1)AUTHOR
J. Bacon
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