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Man Pages


Manual Reference Pages  -  ASN2XML (1)

NAME

asn2xml - translate biological data from ASN.1 to XML

CONTENTS

Synopsis
Description
Options
Author
See Also

SYNOPSIS

asn2xml [-] [-b F] [-e] [-i filename] [-l filename] [-o filename] [-s]

DESCRIPTION

asn2xml converts an NCBI Seq-entry or Bioseq-set from ASN.1 format to an isomorphic XML representation. It differs from asn2asn -x in that it converts packed sequence data back into human-readable ASCII text.

OPTIONS

A summary of options is included below.
- Print usage message
-b F Input asnfile in text mode
-e Input is a Seq-entry
-i filename
  Read ASN.1 from filename (default is stdin)
-l filename
  Log errors to filename (default is stderr)
-o filename
  Write XML to filename (default is stdout)
-s Input is a Seq-submit

AUTHOR

The National Center for Biotechnology Information.

SEE ALSO

asn2all(1), asn2asn(1), asn2ff(1), asn2fsa(1), asn2gb(1), asndhuff(1), gene2xml(1), README.asn2xml, ncbixml.txt
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NCBI ASN2XML (1) 2005-05-16

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