GSP
Quick Navigator

Search Site

Unix VPS
A - Starter
B - Basic
C - Preferred
D - Commercial
MPS - Dedicated
Previous VPSs
* Sign Up! *

Support
Contact Us
Online Help
Handbooks
Domain Status
Man Pages

FAQ
Virtual Servers
Pricing
Billing
Technical

Network
Facilities
Connectivity
Topology Map

Miscellaneous
Server Agreement
Year 2038
Credits
 

USA Flag

 

 

Man Pages


Manual Reference Pages  -  GMX-MK_ANGNDX (1)

NAME

gmx-mk_angndx - Generate index files for ’gmx angle’

CONTENTS

Synopsis
Description
Options
See Also

SYNOPSIS

gmx mk_angndx [-s [<.tpr/.tpb/...>]] [-n [<.ndx>]] [-nice <int>]
[-type <enum>] [-[no]hyd] [-hq <real>]

DESCRIPTION

gmx mk_angndx makes an index file for calculation of angle distributions etc. It uses a run input file (.tpx) for the definitions of the angles, dihedrals etc.

OPTIONS

Options to specify input and output files:

-s [<.tpr/.tpb/...>] (topol.tpr) (Input)
Run input file: tpr tpb tpa

-n [<.ndx>] (angle.ndx) (Output)
Index file

Other options:

-nice <int> (0)
Set the nicelevel

-type <enum> (angle)
Type of angle: angle, dihedral, improper, ryckaert-bellemans

-[no]hyd (yes)
Include angles with atoms with mass 1.5

-hq <real> (-1)
Ignore angles with atoms with mass 1.5 and magnitude of their charge less than this value

SEE ALSO

gromacs(7)

More information about GROMACS is available at <http://www.gromacs.org/>.

Search for    or go to Top of page |  Section 1 |  Main Index


VERSION 5.0.6 GMX-MK_ANGNDX (1)

Powered by GSP Visit the GSP FreeBSD Man Page Interface.
Output converted with manServer 1.07.