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Manual Reference Pages  -  PT-DUPLICATE-KEY-CHECKER (1)

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pt-duplicate-key-checker - Find duplicate indexes and foreign keys on MySQL tables.



Usage: pt-duplicate-key-checker [OPTIONS] [DSN]

pt-duplicate-key-checker examines MySQL tables for duplicate or redundant indexes and foreign keys. Connection options are read from MySQL option files.

   pt-duplicate-key-checker --host host1


Percona Toolkit is mature, proven in the real world, and well tested, but all database tools can pose a risk to the system and the database server. Before using this tool, please:
o Read the tool’s documentation
o Review the tool’s known BUGS
o Test the tool on a non-production server
o Backup your production server and verify the backups


This program examines the output of SHOW CREATE TABLE on MySQL tables, and if it finds indexes that cover the same columns as another index in the same order, or cover an exact leftmost prefix of another index, it prints out the suspicious indexes. By default, indexes must be of the same type, so a BTREE index is not a duplicate of a FULLTEXT index, even if they have the same columns. You can override this.

It also looks for duplicate foreign keys. A duplicate foreign key covers the same columns as another in the same table, and references the same parent table.

The output ends with a short summary that includes an estimate of the total size, in bytes, that the duplicate indexes are using. This is calculated by multiplying the index length by the number of rows in their respective tables.


This tool accepts additional command-line arguments. Refer to the SYNOPSIS and usage information for details.
--all-structs Compare indexes with different structs (BTREE, HASH, etc).

By default this is disabled, because a BTREE index that covers the same columns as a FULLTEXT index is not really a duplicate, for example.

--ask-pass Prompt for a password when connecting to MySQL.
--charset short form: -A; type: string

Default character set. If the value is utf8, sets Perl’s binmode on STDOUT to utf8, passes the mysql_enable_utf8 option to DBD::mysql, and runs SET NAMES UTF8 after connecting to MySQL. Any other value sets binmode on STDOUT without the utf8 layer, and runs SET NAMES after connecting to MySQL.

--[no]clustered default: yes

PK columns appended to secondary key is duplicate.

Detects when a suffix of a secondary key is a leftmost prefix of the primary key, and treats it as a duplicate key. Only detects this condition on storage engines whose primary keys are clustered (currently InnoDB and solidDB).

Clustered storage engines append the primary key columns to the leaf nodes of all secondary keys anyway, so you might consider it redundant to have them appear in the internal nodes as well. Of course, you may also want them in the internal nodes, because just having them at the leaf nodes won’t help for some queries. It does help for covering index queries, however.

Here’s an example of a key that is considered redundant with this option:

  PRIMARY KEY  (`a`)
  KEY `b` (`b`,`a`)

The use of such indexes is rather subtle. For example, suppose you have the following query:


This query will do a filesort if we remove the index on b,a. But if we shorten the index on b,a to just b and also remove the ORDER BY, the query should return the same results.

The tool suggests shortening duplicate clustered keys by dropping the key and re-adding it without the primary key prefix. The shortened clustered key may still duplicate another key, but the tool cannot currently detect when this happens without being ran a second time to re-check the newly shortened clustered keys. Therefore, if you shorten any duplicate clustered keys, you should run the tool again.

--config type: Array

Read this comma-separated list of config files; if specified, this must be the first option on the command line.

--databases short form: -d; type: hash

Check only this comma-separated list of databases.

--defaults-file short form: -F; type: string

Only read mysql options from the given file. You must give an absolute pathname.

--engines short form: -e; type: hash

Check only tables whose storage engine is in this comma-separated list.

--help Show help and exit.
--host short form: -h; type: string

Connect to host.

--ignore-databases type: Hash

Ignore this comma-separated list of databases.

--ignore-engines type: Hash

Ignore this comma-separated list of storage engines.

--ignore-order Ignore index order so KEY(a,b) duplicates KEY(b,a).
--ignore-tables type: Hash

Ignore this comma-separated list of tables. Table names may be qualified with the database name.

--key-types type: string; default: fk

Check for duplicate f=foreign keys, k=keys or fk=both.

--password short form: -p; type: string

Password to use when connecting.

--pid type: string

Create the given PID file. The tool won’t start if the PID file already exists and the PID it contains is different than the current PID. However, if the PID file exists and the PID it contains is no longer running, the tool will overwrite the PID file with the current PID. The PID file is removed automatically when the tool exits.

--port short form: -P; type: int

Port number to use for connection.

--set-vars type: Array

Set the MySQL variables in this comma-separated list of variable=value pairs.

By default, the tool sets:


Variables specified on the command line override these defaults. For example, specifying --set-vars wait_timeout=500 overrides the defaultvalue of 10000.

The tool prints a warning and continues if a variable cannot be set.

--socket short form: -S; type: string

Socket file to use for connection.

--[no]sql default: yes

Print DROP KEY statement for each duplicate key. By default an ALTER TABLE DROP KEY statement is printed below each duplicate key so that, if you want to remove the duplicate key, you can copy-paste the statement into MySQL.

To disable printing these statements, specify --no-sql.

--[no]summary default: yes

Print summary of indexes at end of output.

--tables short form: -t; type: hash

Check only this comma-separated list of tables.

Table names may be qualified with the database name.

--user short form: -u; type: string

User for login if not current user.

--verbose short form: -v

Output all keys and/or foreign keys found, not just redundant ones.

--version Show version and exit.
--[no]version-check default: yes

Check for the latest version of Percona Toolkit, MySQL, and other programs.

This is a standard check for updates automatically feature, with two additional features. First, the tool checks the version of other programs on the local system in addition to its own version. For example, it checks the version of every MySQL server it connects to, Perl, and the Perl module DBD::mysql. Second, it checks for and warns about versions with known problems. For example, MySQL 5.5.25 had a critical bug and was re-released as 5.5.25a.

Any updates or known problems are printed to STDOUT before the tool’s normal output. This feature should never interfere with the normal operation of the tool.

For more information, visit <>.


These DSN options are used to create a DSN. Each option is given like option=value. The options are case-sensitive, so P and p are not the same option. There cannot be whitespace before or after the = and if the value contains whitespace it must be quoted. DSN options are comma-separated. See the percona-toolkit manpage for full details.
o A

dsn: charset; copy: yes

Default character set.

o D

dsn: database; copy: yes

Default database.

o F

dsn: mysql_read_default_file; copy: yes

Only read default options from the given file

o h

dsn: host; copy: yes

Connect to host.

o p

dsn: password; copy: yes

Password to use when connecting.

o P

dsn: port; copy: yes

Port number to use for connection.

o S

dsn: mysql_socket; copy: yes

Socket file to use for connection.

o u

dsn: user; copy: yes

User for login if not current user.


The environment variable PTDEBUG enables verbose debugging output to STDERR. To enable debugging and capture all output to a file, run the tool like:

   PTDEBUG=1 pt-duplicate-key-checker ... > FILE 2>&1

Be careful: debugging output is voluminous and can generate several megabytes of output.


You need Perl, DBI, DBD::mysql, and some core packages that ought to be installed in any reasonably new version of Perl.


For a list of known bugs, see <>.

Please report bugs at <>. Include the following information in your bug report:
o Complete command-line used to run the tool
o Tool --version
o MySQL version of all servers involved
o Output from the tool including STDERR
o Input files (log/dump/config files, etc.)
If possible, include debugging output by running the tool with PTDEBUG; see ENVIRONMENT.


Visit <> to download the latest release of Percona Toolkit. Or, get the latest release from the command line:




You can also get individual tools from the latest release:


Replace TOOL with the name of any tool.


Baron Schwartz and Daniel Nichter


This tool is part of Percona Toolkit, a collection of advanced command-line tools for MySQL developed by Percona. Percona Toolkit was forked from two projects in June, 2011: Maatkit and Aspersa. Those projects were created by Baron Schwartz and primarily developed by him and Daniel Nichter. Visit <> to learn about other free, open-source software from Percona.


This program is copyright 2011-2015 Percona LLC and/or its affiliates, 2007-2011 Baron Schwartz.


This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, version 2; OR the Perl Artistic License. On UNIX and similar systems, you can issue ‘man perlgpl’ or ‘man perlartistic’ to read these licenses.

You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.


pt-duplicate-key-checker 2.2.14
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