GSP
Quick Navigator

Search Site

Unix VPS
A - Starter
B - Basic
C - Preferred
D - Commercial
MPS - Dedicated
Previous VPSs
* Sign Up! *

Support
Contact Us
Online Help
Handbooks
Domain Status
Man Pages

FAQ
Virtual Servers
Pricing
Billing
Technical

Network
Facilities
Connectivity
Topology Map

Miscellaneous
Server Agreement
Year 2038
Credits
 

USA Flag

 

 

Man Pages


Manual Reference Pages  -  BIO::NEXUS::HISTORYBLOCK (3)

.ds Aq ’

NAME

Bio::NEXUS::HistoryBlock - Represents a HISTORY block of a NEXUS file

CONTENTS

SYNOPSIS

$block_object = new Bio::NEXUS::HistoryBlock(’history’, $block, $verbose);

DESCRIPTION

This is a class representing a history block in NEXUS file

FEEDBACK

All feedback (bugs, feature enhancements, etc.) are greatly appreciated.

AUTHORS



 Chengzhi Liang (liangc@umbi.umd.edu)
 Justin Reese
 Tom Hladish (tjhladish at yahoo)



VERSION

$Revision: 1.28 $

METHODS

    new



 Title   : new
 Usage   : block_object = new Bio::NEXUS::HistoryBlock($block_type, $commands, $verbose);
 Function: Creates a new Bio::NEXUS::HistoryBlock object
 Returns : Bio::NEXUS::HistoryBlock object
 Args    : type (string), the commands/comments to parse (array ref), and a verbose flag (0 or 1; optional)
 Comments:



    equals



 Name    : equals
 Usage   : $block->equals($another);
 Function: compare if two Block objects are equal
 Returns : boolean
 Args    : a Block object



    rename_otus



 Name    : rename_otus
 Usage   : $nexus->rename_otus(\%translation);
 Function: rename all OTUs
 Returns : a new nexus object with new OTU names
 Args    : a ref to hash based on OTU name pairs



    add_otu_clone



 Title   : add_otu_clone
 Usage   : ...
 Function: ...
 Returns : ...
 Args    : ...



Search for    or go to Top of page |  Section 3 |  Main Index


perl v5.20.3 BIO::NEXUS::HISTORYBLOCK (3) 2007-09-21

Powered by GSP Visit the GSP FreeBSD Man Page Interface.
Output converted with manServer 1.07.