Manual Reference Pages - BIO::SEQIO::ACE (3)
Bio::SeqIO::ace - ace sequence input/output stream
Do not use this module directly. Use it via the Bio::SeqIO class.
This object can transform Bio::Seq objects to and
from ace file format. It only parses a DNA or
Peptide objects contained in the ace file,
producing PrimarySeq objects from them. All
other objects in the files will be ignored. It
doesnt attempt to parse any annotation attatched
to the containing Sequence or Protein objects,
which would probably be impossible, since
everyones ACeDB schema can be different.
It wont parse ace files containing Timestamps
correctly either. This can easily be added if
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
email@example.com - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution.
Bug reports can be submitted via the web:
AUTHORS - James Gilbert
The rest of the documentation details each of the object
methods. Internal methods are usually preceded with a _
Title : next_seq
Usage : $seq = $stream->next_seq()
Function: returns the next sequence in the stream
Returns : Bio::Seq object
Args : NONE
Title : write_seq
Usage : $stream->write_seq(@seq)
Function: writes the $seq object into the stream
Returns : 1 for success and 0 for error
Args : Bio::Seq object(s)
|perl v5.20.3 ||BIO::SEQIO::ACE (3) ||2016-04-05 |
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