GSP
Quick Navigator

Search Site

Unix VPS
A - Starter
B - Basic
C - Preferred
D - Commercial
MPS - Dedicated
Previous VPSs
* Sign Up! *

Support
Contact Us
Online Help
Handbooks
Domain Status
Man Pages

FAQ
Virtual Servers
Pricing
Billing
Technical

Network
Facilities
Connectivity
Topology Map

Miscellaneous
Server Agreement
Year 2038
Credits
 

USA Flag

 

 

Man Pages


Manual Reference Pages  -  BIO::MAGETAB::REPORTER (3)

.ds Aq ’

NAME

Bio::MAGETAB::Reporter - MAGE-TAB reporter class

CONTENTS

SYNOPSIS



 use Bio::MAGETAB::Reporter;



DESCRIPTION

This class is used to store information on array reporter elements in MAGE-TAB. These elements typically correspond to probe sequences, or in simple cases they may map directly to biologically interesting sequences (e.g., genes). See the DesignElement class for superclass methods.

ATTRIBUTES

name (required) The name of the reporter (data type: String).
sequence (optional) The actual reporter sequence (usually DNA; data type: String).
compositeElements (optional) A list of CompositeElements composed wholly or in part of this reporter (data type: Bio::MAGETAB::CompositeElement).
databaseEntries (optional) A list of database entries for the reporter sequence (data type: Bio::MAGETAB::DatabaseEntry).
controlType (optional) Where the reporter describes a control probe, this attribute should be used to give its type (e.g., ’control_buffer’; data type: Bio::MAGETAB::ControlledTerm).
groups (optional) A list of arbitrary groups to which the reporter belongs. Typically these groups may describe which probes are experimental and which are controls; another use might be to indicate the source species of a probe on a multi-species array design (data type: Bio::MAGETAB::ControlledTerm).

METHODS

Each attribute has accessor (get_*) and mutator (set_*) methods, and also predicate (has_*) and clearer (clear_*) methods where the attribute is optional. Where an attribute represents a one-to-many relationship the mutator accepts an arrayref and the accessor returns an array.

SEE ALSO

Bio::MAGETAB::DesignElement

AUTHOR

Tim F. Rayner <tfrayner@gmail.com>

LICENSE

This library is released under version 2 of the GNU General Public License (GPL).
Search for    or go to Top of page |  Section 3 |  Main Index


perl v5.20.3 BIO::MAGETAB::REPORTER (3) 2013-01-13

Powered by GSP Visit the GSP FreeBSD Man Page Interface.
Output converted with manServer 1.07.